View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_high_1 (Length: 640)
Name: NF6948_high_1
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 16608756 - 16609164
Alignment:
| Q |
13 |
tttggtgttgtttaactttgaaatatatatagattt-gcagccttattatataatggttttgcattatgctttgtgatagagttttatacaaattcgaca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16608756 |
tttggtgttgtttaactttgaaatatatatagattttgcagccttattatataatggttttgcattatgctttgtgatggagttttatacaaattcgaca |
16608855 |
T |
|
| Q |
112 |
actcccggtttttggtcccgatgaaggtccgacgttgaagaaggtggcgagacttgacgcttctattttgggagatttaaatatttctccagcctttaaa |
211 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16608856 |
actcccggtttttggtcccgatgaaggtctgacgttgaagaaggtggcgagacttggcgcttctattttgggagatttaaatat---tccagcctttaaa |
16608952 |
T |
|
| Q |
212 |
tttcctcctatcatcaagttgttccattgggagcctcctactcacccttgcctaaagattaatattgatggatctttagttggtaatgttgaaacttgca |
311 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16608953 |
tttcctcctatgatcaagttgttccattgggagcctcctactcacccttgcctaaaggttaatattgatggatctttagttggtaatgttgaaacttgca |
16609052 |
T |
|
| Q |
312 |
gtggtatttttataaatgctctttcggtttacatgggcagtttttctagcaagctttaggttatttcagttttgcatgcagagcttcttggtattaatat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
16609053 |
--ggtatttttataaatgctctttcggtttacatgggcagtttttctagcaacctttaggttaattcagttttgcatggagagcttcttggtattaatat |
16609150 |
T |
|
| Q |
412 |
tgctattgagcagg |
425 |
Q |
| |
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|||||||||||||| |
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| T |
16609151 |
tgctattgagcagg |
16609164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 422 - 623
Target Start/End: Original strand, 16609221 - 16609423
Alignment:
| Q |
422 |
caggcttccaaataccattacattgttccttgggaccttcgtaaccgctggagtaattgtttcggtttgaatctgcagcttttgttttctcatgtttttt |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16609221 |
caggcttccaaataccattacattgttccttgggacctttgtaaccgttggagtaattgtttcggtttgaatctgcggcttttgttttctcatgtttttt |
16609320 |
T |
|
| Q |
522 |
ggaaaggtaactcttgtgctgacaagctagcagccttggggcatgactgttttgatttttc-ttggtggcatactatttctgtcaaccttttgggggact |
620 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
16609321 |
gggaaggtaactcttgtgctgacaagctagcagctttggggcatgactgttctgatttttctttggtggcatactatttctgtcaacctttcgggggact |
16609420 |
T |
|
| Q |
621 |
tgt |
623 |
Q |
| |
|
||| |
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|
| T |
16609421 |
tgt |
16609423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 422 - 615
Target Start/End: Original strand, 2697750 - 2697945
Alignment:
| Q |
422 |
caggcttccaaataccattacattgttccttgggaccttcgtaaccgctggagtaattgtttcggt--ttgaatctgcagcttttgttttctcatgtttt |
519 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| || |||||| |||||||| |||||||||||||||| |
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| T |
2697750 |
caggcttccaaatctcattacattgttccttaggaccttcgtaaccgctggagcaattgttttggggcttgaatatgcagcttctgttttctcatgtttt |
2697849 |
T |
|
| Q |
520 |
ttggaaaggtaactcttgtgctgacaagctagcagccttggggcatgactgttttgatttttcttggtggcatactatttctgtcaaccttttggg |
615 |
Q |
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|| ||||||||||||||||||| | ||||||||||| ||||||||||||| |||| ||||||||||| |||||||| ||||| | ||||||| |
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| T |
2697850 |
cagggaaggtaactcttgtgctgatacactagcagccttagggcatgactgttctgatatttcttggtgggatactattcatgtcagctttttggg |
2697945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 2697605 - 2697686
Alignment:
| Q |
325 |
aaatgctctttcggtttacatgggcagtttttctagcaagctttaggttatttcagttttgcatgcagagcttcttggtatt |
406 |
Q |
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|||||| ||||| ||||||||||| ||||||||||| |||||| || ||| ||||||||||||||| ||||||| ||||||| |
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| T |
2697605 |
aaatgcactttcagtttacatgggaagtttttctagaaagcttcagattaattcagttttgcatgccgagcttcgtggtatt |
2697686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 437 - 490
Target Start/End: Original strand, 16022147 - 16022200
Alignment:
| Q |
437 |
cattacattgttccttgggaccttcgtaaccgctggagtaattgtttcggtttg |
490 |
Q |
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| T |
16022147 |
cattacattgttccttgggaccttcgtaatcgttggagtaattgtttcggtttg |
16022200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 53510299 - 53510194
Alignment:
| Q |
60 |
atataatggttttgcattatgctttgtgatagagttttatacaaattcgacaactcccggtttttggtcccgatgaaggtccgacgttgaagaaggtggc |
159 |
Q |
| |
|
||||| ||||||||| || |||||| ||| || || |||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
53510299 |
atatattggttttgcgttgtgctttacgatggaattgtatacaaatttgacagttccttgtttttggtccttatgaaggtccgacgttgaagaaggtggt |
53510200 |
T |
|
| Q |
160 |
gagact |
165 |
Q |
| |
|
|||||| |
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| T |
53510199 |
gagact |
53510194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 53513908 - 53513803
Alignment:
| Q |
60 |
atataatggttttgcattatgctttgtgatagagttttatacaaattcgacaactcccggtttttggtcccgatgaaggtccgacgttgaagaaggtggc |
159 |
Q |
| |
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||||| |||||||||||| |||||| |||| || || |||||||||| |||| ||| ||||||||||| ||| ||||| ||||||||||||||||| |
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| T |
53513908 |
atatattggttttgcattgtgctttatgatggaattgtatacaaatttgacagttccttgtttttggtccttatgtaggtctgacgttgaagaaggtggt |
53513809 |
T |
|
| Q |
160 |
gagact |
165 |
Q |
| |
|
|||||| |
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|
| T |
53513808 |
gagact |
53513803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 53524208 - 53524103
Alignment:
| Q |
60 |
atataatggttttgcattatgctttgtgatagagttttatacaaattcgacaactcccggtttttggtcccgatgaaggtccgacgttgaagaaggtggc |
159 |
Q |
| |
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||||| ||||||| |||||||||| |||| || || |||||||||| |||| || ||||||||| | ||||||||| ||||||||||||||||| |
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| T |
53524208 |
atatattggttttatattatgctttatgatggaattgtatacaaatttgacagttctttgtttttggtacttatgaaggtctgacgttgaagaaggtggt |
53524109 |
T |
|
| Q |
160 |
gagact |
165 |
Q |
| |
|
|||||| |
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|
| T |
53524108 |
gagact |
53524103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 581
Target Start/End: Complemental strand, 49733168 - 49733132
Alignment:
| Q |
545 |
aagctagcagccttggggcatgactgttttgattttt |
581 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||| |
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|
| T |
49733168 |
aagctagcagccttggggcatgacggttctgattttt |
49733132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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