View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6948_high_17 (Length: 324)

Name: NF6948_high_17
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6948_high_17
NF6948_high_17
[»] chr8 (9 HSPs)
chr8 (141-248)||(44251262-44251368)
chr8 (142-234)||(3234656-3234747)
chr8 (17-89)||(30927928-30928002)
chr8 (17-91)||(7129531-7129607)
chr8 (17-89)||(1065417-1065491)
chr8 (17-89)||(41273515-41273589)
chr8 (17-89)||(41293718-41293792)
chr8 (198-234)||(3813253-3813289)
chr8 (12-60)||(5924842-5924889)
[»] chr4 (19 HSPs)
chr4 (174-248)||(40184339-40184413)
chr4 (249-306)||(40184483-40184540)
chr4 (17-89)||(13267475-13267549)
chr4 (9-91)||(39010126-39010210)
chr4 (198-241)||(54512273-54512316)
chr4 (17-90)||(19720638-19720713)
chr4 (17-94)||(51377290-51377369)
chr4 (174-227)||(20281434-20281487)
chr4 (17-89)||(27001406-27001480)
chr4 (17-89)||(34259815-34259889)
chr4 (39-95)||(42178068-42178127)
chr4 (9-89)||(44368191-44368273)
chr4 (17-89)||(53662425-53662499)
chr4 (17-89)||(55267998-55268072)
chr4 (22-89)||(3222989-3223058)
chr4 (26-89)||(5208333-5208398)
chr4 (24-91)||(8680939-8681008)
chr4 (39-91)||(13389470-13389525)
chr4 (26-89)||(24235320-24235385)
[»] chr3 (16 HSPs)
chr3 (140-248)||(4549490-4549597)
chr3 (174-248)||(860856-860930)
chr3 (141-226)||(23308596-23308680)
chr3 (17-90)||(11327107-11327182)
chr3 (9-89)||(8254027-8254109)
chr3 (17-89)||(32931915-32931989)
chr3 (20-91)||(2482674-2482747)
chr3 (44-90)||(43441671-43441720)
chr3 (23-89)||(53932394-53932462)
chr3 (20-89)||(27162469-27162540)
chr3 (17-90)||(50879594-50879669)
chr3 (17-89)||(20714243-20714317)
chr3 (17-89)||(36818956-36819030)
chr3 (26-89)||(108431-108496)
chr3 (38-89)||(5398918-5398972)
chr3 (140-236)||(18365771-18365866)
[»] chr1 (15 HSPs)
chr1 (165-248)||(51043020-51043103)
chr1 (171-236)||(36632941-36633006)
chr1 (140-248)||(16299831-16299938)
chr1 (140-248)||(17063235-17063342)
chr1 (165-228)||(36632866-36632929)
chr1 (142-248)||(7015910-7016015)
chr1 (165-234)||(17064061-17064130)
chr1 (187-248)||(41463920-41463981)
chr1 (142-234)||(9026214-9026304)
chr1 (140-243)||(10556259-10556360)
chr1 (17-91)||(25995458-25995534)
chr1 (17-90)||(13813557-13813632)
chr1 (174-248)||(28033918-28033992)
chr1 (17-89)||(11097881-11097955)
chr1 (17-89)||(42256460-42256534)
[»] chr2 (18 HSPs)
chr2 (9-89)||(44484645-44484727)
chr2 (165-248)||(18318328-18318411)
chr2 (17-89)||(34144548-34144622)
chr2 (9-89)||(35171215-35171297)
chr2 (17-89)||(36909840-36909914)
chr2 (9-89)||(3196076-3196158)
chr2 (9-66)||(36383488-36383544)
chr2 (26-89)||(36435681-36435746)
chr2 (186-234)||(43305270-43305318)
chr2 (26-91)||(37257447-37257516)
chr2 (9-89)||(10687941-10688023)
chr2 (17-89)||(15283247-15283321)
chr2 (17-89)||(27307228-27307302)
chr2 (17-87)||(29611924-29611993)
chr2 (17-66)||(44085300-44085348)
chr2 (24-103)||(9695065-9695146)
chr2 (38-89)||(20534068-20534122)
chr2 (142-234)||(38623655-38623745)
[»] chr5 (14 HSPs)
chr5 (9-90)||(30574366-30574449)
chr5 (141-228)||(1422660-1422746)
chr5 (165-248)||(19264704-19264787)
chr5 (22-91)||(9599730-9599801)
chr5 (9-90)||(22920481-22920564)
chr5 (17-89)||(9594478-9594552)
chr5 (17-89)||(14914372-14914446)
chr5 (9-66)||(28501643-28501699)
chr5 (24-91)||(39788710-39788779)
chr5 (17-89)||(32634708-32634782)
chr5 (26-89)||(3634494-3634559)
chr5 (16-91)||(27440477-27440554)
chr5 (17-88)||(31025002-31025075)
chr5 (20-64)||(32379929-32379972)
[»] chr6 (11 HSPs)
chr6 (140-243)||(31636873-31636975)
chr6 (187-248)||(5583584-5583645)
chr6 (9-66)||(12501500-12501556)
chr6 (14-61)||(21210290-21210336)
chr6 (24-89)||(3339503-3339570)
chr6 (17-90)||(12500024-12500099)
chr6 (17-90)||(12507353-12507428)
chr6 (17-90)||(12508802-12508877)
chr6 (26-91)||(25995440-25995507)
chr6 (17-89)||(2056783-2056857)
chr6 (26-89)||(17417241-17417306)
[»] chr7 (8 HSPs)
chr7 (17-90)||(33050182-33050257)
chr7 (17-89)||(13437198-13437272)
chr7 (9-66)||(8326151-8326207)
chr7 (17-89)||(30864414-30864488)
chr7 (17-89)||(43079629-43079703)
chr7 (17-89)||(44511139-44511213)
chr7 (23-90)||(2347062-2347131)
chr7 (41-90)||(42118715-42118766)
[»] scaffold0026 (1 HSPs)
scaffold0026 (26-90)||(113624-113690)
[»] scaffold0011 (1 HSPs)
scaffold0011 (17-97)||(18587-18669)
[»] scaffold0004 (1 HSPs)
scaffold0004 (12-89)||(249134-249213)
[»] scaffold0085 (1 HSPs)
scaffold0085 (17-86)||(31297-31366)


Alignment Details
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 44251368 - 44251262
Alignment:
Q  141 ggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtca 240  Q
    ||||||||||| |||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||| || ||||||   ||||| |||||    
T  44251368 ggttaaggaagccaaaagagaaa-attttaagccaaaagaggaaacatttaatgcattgattacacaactttgaatacaaatattatattttttgggtca 44251270  T
Q  241 ttagttaa 248  Q
    ||| ||||    
T  44251269 ttatttaa 44251262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 3234656 - 3234747
Alignment:
Q  142 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 234  Q
    ||||||||||||||||||| || | ||||| ||||| || |||   |||||| || ||||||||||| |||||||||| ||||||||||||||    
T  3234656 gttaaggaagtcaaaagaggaa-actttaagccaaatgaagaagcctttaattcattgattacacaattttgaatgcaaatattacccttttt 3234747  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 30927928 - 30928002
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| |||||| |||||| || ||||||||||||| ||||||||||||||   ||||||| |||||||||||||||    
T  30927928 aagaccatcatatgagta-tgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctc 30928002  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 7129607 - 7129531
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctcaa 91  Q
    ||||| |||||||||||| |||||||||||||||| ||||| |||||||   |||||||| ||||||| |||| ||||    
T  7129607 aagaaaatcatgtgagta-tgtgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatattatttatcaa 7129531  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 1065491 - 1065417
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| |||||||||||||||    
T  1065491 aagaccatcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctc 1065417  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 41273589 - 41273515
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  41273589 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgtttgtacaaatatcatttctc 41273515  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 41293718 - 41293792
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   |||||||  ||||||||||||||    
T  41293718 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtaaaaatatcatttctc 41293792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 3813289 - 3813253
Alignment:
Q  198 tgattacacaactttgaatgcatatattacccttttt 234  Q
    |||||||||||||||||||||| |||||||| |||||    
T  3813289 tgattacacaactttgaatgcaaatattaccattttt 3813253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 5924889 - 5924842
Alignment:
Q  12 atgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaatt 60  Q
    |||| ||||||||||||||||| ||| ||||||||||||| ||||||||    
T  5924889 atgaaaagaacatcatgtgagt-atgagagagaaagttgtacaaaaatt 5924842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 40184339 - 40184413
Alignment:
Q  174 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 248  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||| ||||    
T  40184339 caaaagaagaaatatttaatgcaatgattacacaactttgaatacatatattatcctttttaagttattatttaa 40184413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 40184483 - 40184540
Alignment:
Q  249 catgactcttgtattaattagctagtccgctattgtttacaagaagataatcacaagg 306  Q
    |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  40184483 catgacccttatattaattagctagtccgctattgtttacaagaacataatcacaagg 40184540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 13267475 - 13267549
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    ||||| |||||||||||| |||||||||||||| | ||||| |||||||   |||||||| |||||||||||||||    
T  13267475 aagaaaatcatgtgagta-tgtgagagaaagttttccaaaatttgtcacaaaatggttgtacaaatatcatttctc 13267549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 39010126 - 39010210
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 91  Q
    ||||||| ||||||||||| |||||| || ||||||||| |||  |||| ||||||||   ||||||| |||||||||||||||||    
T  39010126 gagatgataagaacatcatttgagta-tgagagagaaagctgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctcaa 39010210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 54512273 - 54512316
Alignment:
Q  198 tgattacacaactttgaatgcatatattaccctttttaggtcat 241  Q
    |||||||||||||||||||| | | |||||||||||||||||||    
T  54512273 tgattacacaactttgaatgtaaacattaccctttttaggtcat 54512316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 19720638 - 19720713
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    ||||| || |||||||||| | ||||||||||| ||||||| ||||||||   ||| ||||||||||||||||||||    
T  19720638 aagaatattatgtgagtaa-gagagagaaagttattcaaaagttgtcacaaaatggatgtgcaaatatcatttctca 19720713  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 51377290 - 51377369
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaacaa 94  Q
    |||| ||||||||||||| || ||||||||||||  ||||| ||||||||   ||||||| ||||||||||||||| ||||    
T  51377290 aagaccatcatgtgagta-tgagagagaaagttggacaaaagttgtcacaaattggttgtacaaatatcatttctctacaa 51377369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 20281434 - 20281487
Alignment:
Q  174 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattac 227  Q
    ||||||| |||| |||||||||| ||||||||||| ||| |||||| |||||||    
T  20281434 caaaagatgaaacatttaatgcattgattacacaattttaaatgcaaatattac 20281487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 27001406 - 27001480
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| |||||||||||||||    
T  27001406 aagaccatcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctc 27001480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 34259889 - 34259815
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||| || ||||||||| || ||||||||||||||||| | ||||||||   ||||||| |||||||||||||||    
T  34259889 aagaagataatgtgagta-tgagagagaaagttgttcaacagttgtcacaaaatggttgtacaaatatcatttctc 34259815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 42178068 - 42178127
Alignment:
Q  39 gagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaacaaa 95  Q
    |||||||| || |||||||||||||||||   | |||| |||||||||||||||||||||    
T  42178068 gagagaaaattattcaaaaattgtcacataatgattgtacaaatatcatttctcaacaaa 42178127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 44368191 - 44368273
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||| |||| ||||||||||||| |  ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  44368191 gagatgataagaccatcatgtgagta-taagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 44368273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 53662425 - 53662499
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    ||||||||||||||| || || ||||||||||||| |||||||||| ||   || ||||| |||||||||||||||    
T  53662425 aagaacatcatgtgaata-tgagagagaaagttgtacaaaaattgttacaaaatagttgtacaaatatcatttctc 53662499  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 55267998 - 55268072
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || |||| |||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  55267998 aagatcatcatgtgagta-tgagagataaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 55268072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 3223058 - 3222989
Alignment:
Q  22 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  3223058 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 3222989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 5208333 - 5208398
Alignment:
Q  26 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  5208333 atgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 5208398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 8681008 - 8680939
Alignment:
Q  24 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaa 91  Q
    ||||||||||| || ||||||||||||| |||||| | ||||||   |||||| |||||||||||||||||    
T  8681008 tcatgtgagta-tgagagagaaagttgtccaaaaaatatcacataatggttgtacaaatatcatttctcaa 8680939  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 13389470 - 13389525
Alignment:
Q  39 gagagaaagttgtt-caaaaattgtcac--atggttgtgcaaatatcatttctcaa 91  Q
    |||||||||||||  |||||||||||||  |||||||| |||||||||||||||||    
T  13389470 gagagaaagttgtcgcaaaaattgtcaccaatggttgttcaaatatcatttctcaa 13389525  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 24235385 - 24235320
Alignment:
Q  26 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||||| || ||||||||||||| ||||||||||||||   || |||| |||||||||||||||    
T  24235385 atgtgagta-tgagagagaaagttgtacaaaaattgtcacaaattgattgtacaaatatcatttctc 24235320  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 4549490 - 4549597
Alignment:
Q  140 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 239  Q
    ||||||||||||||||||||| || ||||||| | ||||||| || |||| |||||| | || ||||||||||||||||| |||||| ||||||| ||||    
T  4549490 tggttaaggaagtcaaaagagaaa-attttaagctaaaagagaaagtattcaatgcattaataacacaactttgaatgcaaatattaacctttttgggtc 4549588  T
Q  240 attagttaa 248  Q
    |||| ||||    
T  4549589 attatttaa 4549597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 860856 - 860930
Alignment:
Q  174 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 248  Q
    |||||||| |||||||||||  | | |||||||||||||||||||| | |||||| |||||||||||||| ||||    
T  860856 caaaagagaaaatatttaatatatttattacacaactttgaatgcaaacattaccatttttaggtcattatttaa 860930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 23308680 - 23308596
Alignment:
Q  141 ggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatatta 226  Q
    |||||||||||| ||||||  |||||||| |  ||||||||||| ||||||||||| ||||||||||| |||||||| | ||||||    
T  23308680 ggttaaggaagttaaaagat-aatatttttagtcaaaagaggaagtatttaatgcattgattacacaattttgaatgtaaatatta 23308596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 11327182 - 11327107
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| ||||||||||||||||    
T  11327182 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctca 11327107  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 8254109 - 8254027
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||| |||| ||||||||||||| || ||||||||||||| | ||| ||||||||   ||||||| |||||||||||||||    
T  8254109 gagatgataagaccatcatgtgagta-tgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 8254027  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 32931915 - 32931989
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  32931915 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 32931989  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 2482674 - 2482747
Alignment:
Q  20 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctcaa 91  Q
    |||||||||||| || || ||||||||||||||||||| |||||||   |||| ||| |||||||||||||||||    
T  2482674 aacatcatgtgatta-tgagagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctcaa 2482747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 43441720 - 43441671
Alignment:
Q  44 aaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctca 90  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  43441720 aaagttgttcaaaaattgtcacataatggttgtacaaatatcatttctca 43441671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 53932394 - 53932462
Alignment:
Q  23 atcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    |||||||||||| || ||| ||||||||| |||||||||||||   |||||||| |||||||||||||||    
T  53932394 atcatgtgagta-tgagagtgaaagttgtccaaaaattgtcacaaaatggttgtacaaatatcatttctc 53932462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 27162469 - 27162540
Alignment:
Q  20 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    ||||||||||||||| || ||||||||||||||||||| |||| ||   |||||||| ||||||||| |||||    
T  27162469 aacatcatgtgagta-tgagagagaaagttgttcaaaagttgttacaaaatggttgtacaaatatcacttctc 27162540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 50879669 - 50879594
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   | ||||| ||||||||||||||||    
T  50879669 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaatttagttgtacaaatatcatttctca 50879594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 20714317 - 20714243
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| |||||||||||||||    
T  20714317 aagaccatcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctc 20714243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 36819030 - 36818956
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||| ||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  36819030 aagaccatgatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 36818956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 108496 - 108431
Alignment:
Q  26 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||||| || |||||||||||||  |||||||||||||   ||||||| |||||||||||||||    
T  108496 atgtgagta-tgagagagaaagttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctc 108431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 5398972 - 5398918
Alignment:
Q  38 tgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||||||||||  |||||||||||||   ||||||| |||||||||||||||    
T  5398972 tgagagaaagttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctc 5398918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 18365771 - 18365866
Alignment:
Q  140 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttag 236  Q
    |||||||||||| |||||||| || |||| ||  |||||||| ||   ||||||||| | |||||| ||||||||| | | ||||||||||||||||    
T  18365771 tggttaaggaagccaaaagaggaaaattt-aagtcaaaagagaaagcttttaatgcatttattacataactttgaaggtaaatattaccctttttag 18365866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 51043103 - 51043020
Alignment:
Q  165 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 248  Q
    |||||||  ||||||||||| ||||||||||| |||||||||||||||||||  | |||||||||||||||||| |||| ||||    
T  51043103 attttaagtcaaaagaggaagtatttaatgcattgattacacaactttgaatataaatattaccctttttaggttattatttaa 51043020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 36633006 - 36632941
Alignment:
Q  171 aaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttag 236  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  36633006 aaccaaaagaggaagcatttaatgcattgattacacaactttgaatgcaaatattacccttattag 36632941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 16299831 - 16299938
Alignment:
Q  140 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 239  Q
    ||||||||||||  ||| ||| || ||||||| |||||| || || |||||||| || ||||||||||| |||||||||| |||||||||||||| |||     
T  16299831 tggttaaggaagctaaacgaggaa-attttaagccaaaaaagaaagtatttaattcattgattacacaattttgaatgcagatattaccctttttgggta 16299929  T
Q  240 attagttaa 248  Q
    |||| ||||    
T  16299930 attatttaa 16299938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 17063342 - 17063235
Alignment:
Q  140 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 239  Q
    |||||||| |||||||||||| || |||||||  ||||||| |||  |||||||||| |||||  ||||||| ||||| | ||||||| ||| |||||||    
T  17063342 tggttaagtaagtcaaaagaggaa-attttaagtcaaaagatgaagcatttaatgcattgattctacaacttcgaatgtaaatattactcttattaggtc 17063244  T
Q  240 attagttaa 248  Q
    |||| ||||    
T  17063243 attatttaa 17063235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 36632866 - 36632929
Alignment:
Q  165 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacc 228  Q
    ||||||| | |||||| |||  |||||||||| |||||||||||||||||||||| ||||||||    
T  36632866 attttaagcaaaaagatgaatcatttaatgcattgattacacaactttgaatgcaaatattacc 36632929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 7015910 - 7016015
Alignment:
Q  142 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcat 241  Q
    |||||||||| |||||||| ||  ||||||  | |||||||||  |||||||||| ||||||||||| |||||||||| ||||| || ||||  ||||||    
T  7015910 gttaaggaagccaaaagaggaag-ttttaagtctaaagaggaagcatttaatgcattgattacacaattttgaatgcaaatatttcctttttggggtcat 7016008  T
Q  242 tagttaa 248  Q
    || ||||    
T  7016009 tatttaa 7016015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 17064061 - 17064130
Alignment:
Q  165 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 234  Q
    ||||||| ||||||||  |||||||||||||| |||||||  |||||| |||||| |||||| |||||||    
T  17064061 attttaagccaaaagaaaaaatatttaatgcattgattactaaactttaaatgcaaatattatccttttt 17064130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 41463920 - 41463981
Alignment:
Q  187 atttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 248  Q
    |||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||| ||||    
T  41463920 atttaatgcattgattacataactttgaatgcaaatattatcctttttggatcattatttaa 41463981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 9026214 - 9026304
Alignment:
Q  142 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 234  Q
    ||||| ||||||||||||| || ||||||| |||||||| |||  |||||||||| ||||||||||| ||| |||| | |||||||| |||||    
T  9026214 gttaatgaagtcaaaagagaaa-attttaagccaaaagatgaagcatttaatgcattgattacacaa-tttaaatgtaaatattacctttttt 9026304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 10556259 - 10556360
Alignment:
Q  140 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 239  Q
    ||||||||||||||||||||  || |||||||  |||||||||||  |||||||| | || || || ||||||||||||| || ||||||||||  ||||    
T  10556259 tggttaaggaagtcaaaagaagaa-attttaagtcaaaagaggaagcatttaatgtattggttgcataactttgaatgcagat-ttacccttttggggtc 10556356  T
Q  240 atta 243  Q
    ||||    
T  10556357 atta 10556360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 25995534 - 25995458
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 91  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||||    
T  25995534 aagaccatcatgtgagta-tgagagagaaagttgtacaaaacttgtcacaaattgattgtacaaatatcatttctcaa 25995458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 13813632 - 13813557
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    |||| ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| ||||||||||||||||    
T  13813632 aagaccatcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctca 13813557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 28033992 - 28033918
Alignment:
Q  174 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 248  Q
    |||||||||||  ||||||| || ||||||||||||||| |||||| ||||| | ||||||  ||||||| ||||    
T  28033992 caaaagaggaagcatttaatacattgattacacaactttaaatgcaaatattgctctttttgagtcattatttaa 28033918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 11097881 - 11097955
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    ||||| || ||||||||| || ||||||||||||||||||| |||||||   |||| ||| |||||||||||||||    
T  11097881 aagaatattatgtgagta-tgagagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctc 11097955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 42256534 - 42256460
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| | ||| ||||||||   ||||||| |||||||||||||||    
T  42256534 aagaccatcatgtgagta-tgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 42256460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 44484645 - 44484727
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||| ||   |||||||| |||||||||||||||    
T  44484645 gagatgataagaacatcatgtgagt-atgagagagaaagttgtacaaaaattgttacaaaatggttgtacaaatatcatttctc 44484727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 18318328 - 18318411
Alignment:
Q  165 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 248  Q
    ||||||| ||||||||  ||  |||||||||| |||||||||||||||||||||| ||||||| |||||| ||| |||| ||||    
T  18318328 attttaagccaaaagataaagcatttaatgcattgattacacaactttgaatgcaaatattactctttttgggtaattatttaa 18318411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 34144548 - 34144622
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| ||||||||||||||   ||||||| |||||||||||||||    
T  34144548 aagaccatcatgtgagta-tgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctc 34144622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 35171215 - 35171297
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    ||||||| |||| ||||||||||||| || ||||||||||||| | |||||||||||   |||||||| |||||||||||||||    
T  35171215 gagatgataagaccatcatgtgagta-tgagagagaaagttgtaccaaaattgtcacaaaatggttgtacaaatatcatttctc 35171297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 36909840 - 36909914
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    ||||| |||||||||||| |||||||||||||||| ||||| |||||||   |||||||| |||||||||||||||    
T  36909840 aagaaaatcatgtgagta-tgtgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctc 36909914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 3196076 - 3196158
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||| |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  3196076 gagatgataagatcatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 3196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 36383544 - 36383488
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 66  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||| ||||| ||||||||    
T  36383544 gagatgataagaacatcatgtgagt-atgagagagaaagttgtacaaaagttgtcaca 36383488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 36435746 - 36435681
Alignment:
Q  26 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||||| ||||||||||||||||| |||| ||||||||   ||||||| |||||||||||||||    
T  36435746 atgtgagta-tgtgagagaaagttgttaaaaagttgtcacaaagtggttgtacaaatatcatttctc 36435681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 43305318 - 43305270
Alignment:
Q  186 tatttaatgcaatgattacacaactttgaatgcatatattacccttttt 234  Q
    ||||||||||| ||||||||||||||| |||||| |||||| |||||||    
T  43305318 tatttaatgcattgattacacaactttaaatgcaaatattatccttttt 43305270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 37257516 - 37257447
Alignment:
Q  26 atgtgagtaatgtgagagaaagttgtt-caaaaattgtcac---atggttgtgcaaatatcatttctcaa 91  Q
    |||||||||||| |||||||||||||| ||||| |||||||   |||| ||| |||||||||||||||||    
T  37257516 atgtgagtaatgagagagaaagttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctcaa 37257447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 10688023 - 10687941
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||| |||| |||||||||||| ||| |||||||||||||  |||| ||||||||   || |||| |||||||||||||||    
T  10688023 gagatgataagaccatcatgtgagt-atgagagagaaagttgtataaaagttgtcacaaattgtttgtacaaatatcatttctc 10687941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 15283247 - 15283321
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||| || ||||||||| || |||||||||||||  |||||||||||||   ||||||| |||||||||||||||    
T  15283247 aagaatataatgtgagta-tgagagagaaagttgtctaaaaattgtcacaaagtggttgtacaaatatcatttctc 15283321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 27307228 - 27307302
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  27307228 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 27307302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 29611924 - 29611993
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttc 87  Q
    ||||||||||||||||||   ||||||| ||||| ||||||||||||||   |||||| |||||||||||||||    
T  29611924 aagaacatcatgtgagta---tgagagagagttg-tcaaaaattgtcacaaaatggttatgcaaatatcatttc 29611993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 44085348 - 44085300
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 66  Q
    |||||||||||||||||| ||||| ||||| |||| ||||||||||||||    
T  44085348 aagaacatcatgtgagta-tgtgatagaaaattgtccaaaaattgtcaca 44085300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 9695065 - 9695146
Alignment:
Q  24 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaacaaagaattata 103  Q
    ||||||||||| || ||||||||||||| |||||||| || |||   |||||| ||||||||||||||||  ||| |||||||    
T  9695065 tcatgtgagta-tgagagagaaagttgtccaaaaattatctcataatggttgtacaaatatcatttctcattaaataattata 9695146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 20534068 - 20534122
Alignment:
Q  38 tgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||||| |||||||| |||| |||||   |||||||||||||||||||||||    
T  20534068 tgagagaaaattgttcaacaattatcacaaaatggttgtgcaaatatcatttctc 20534122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 38623745 - 38623655
Alignment:
Q  142 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 234  Q
    ||||| |||| |||||||| || ||||||| |||||| || ||  ||||||| || ||||||||||||||| |||||| |||||| |||||||    
T  38623745 gttaaagaagccaaaagaggaa-attttaagccaaaa-agaaagcatttaattcattgattacacaactttaaatgcaaatattatccttttt 38623655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 30574366 - 30574449
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    ||||||| |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| ||||||||||||||||    
T  30574366 gagatgataagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctca 30574449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 1422746 - 1422660
Alignment:
Q  141 ggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacc 228  Q
    ||||||||||| |||||||| || ||||||| ||||||||| ||  ||| |||||| ||||||  |||||||||||||| ||||||||    
T  1422746 ggttaaggaagccaaaagag-aagattttaagccaaaagagtaagcattcaatgcattgattatccaactttgaatgcaaatattacc 1422660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 19264704 - 19264787
Alignment:
Q  165 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 248  Q
    |||||||  |||||||| |||||||||||||| ||||||  |||||||||||||| | |||||| |||||  ||||||| ||||    
T  19264704 attttaaggcaaaagagaaaatatttaatgcattgattatccaactttgaatgcaaacattaccatttttgagtcattatttaa 19264787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 9599730 - 9599801
Alignment:
Q  22 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 91  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||||    
T  9599730 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcaa 9599801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 22920481 - 22920564
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctca 90  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||| ||||| |||| ||   |||||||| ||||||| ||||||||    
T  22920481 gagatgataagaacatcatgtgagt-atgagagagaaagttgtccaaaatttgttacaaaatggttgtacaaatattatttctca 22920564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 9594552 - 9594478
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  9594552 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 9594478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 14914446 - 14914372
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||||||||||| || ||| |||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  14914446 aagaacatcatgtgaata-tgtaagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctc 14914372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 28501699 - 28501643
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 66  Q
    ||||||| ||||||||||||||| || || ||||||||||||| ||||||||||||||    
T  28501699 gagatgataagaacatcatgtgaata-tgagagagaaagttgtacaaaaattgtcaca 28501643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 39788710 - 39788779
Alignment:
Q  24 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaa 91  Q
    ||||||||||| || ||||||||||||| ||||| |||||||||   |||||| |||||||||||||||||    
T  39788710 tcatgtgagta-tgagagagaaagttgtccaaaagttgtcacataatggttgtacaaatatcatttctcaa 39788779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 32634782 - 32634708
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  32634782 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacagattgattgtacaaatatcatttctc 32634708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 3634559 - 3634494
Alignment:
Q  26 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||||||| || |||||||||||||  |||||||||||||   ||||||||||||||| |||||||    
T  3634559 atgtgagta-tgagagagaaagttgtaaaaaaattgtcacaaagtggttgtgcaaatataatttctc 3634494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 27440554 - 27440477
Alignment:
Q  16 gaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 91  Q
    ||||||||  ||||||||| || |||||||| |||||||||| ||||||||   || |||| |||||||||||||||||    
T  27440554 gaagaacacaatgtgagta-tgagagagaaaattgttcaaaagttgtcacaaaatgattgtacaaatatcatttctcaa 27440477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 31025002 - 31025075
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttct 88  Q
    ||||| || ||||||||| || |||||||||||||| ||||||||||| |   ||||||| ||||||||||||||    
T  31025002 aagaatataatgtgagta-tgagagagaaagttgttaaaaaattgtcataatgtggttgtacaaatatcatttct 31025075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 32379929 - 32379972
Alignment:
Q  20 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtca 64  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||    
T  32379929 aacatcatgtgagta-tgagagagaaagttgttcaaaagttgtca 32379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 31636873 - 31636975
Alignment:
Q  140 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 239  Q
    |||||||| ||| |||||||| |  ||||||||||||||||  || ||||||||| | | ||||||||||||| |||||| |||||||| ||| |||||     
T  31636873 tggttaagaaaggcaaaagaggac-attttaaaccaaaagaaaaagtatttaatgtattaattacacaactttaaatgcaaatattaccttttgtaggtt 31636971  T
Q  240 atta 243  Q
    ||||    
T  31636972 atta 31636975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 5583645 - 5583584
Alignment:
Q  187 atttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 248  Q
    |||||||||| ||||||||||||||||| |||| |||||||  ||||||||| |||| ||||    
T  5583645 atttaatgcattgattacacaactttgattgcaaatattacattttttaggttattatttaa 5583584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 12501556 - 12501500
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 66  Q
    ||||||| ||||||||||| | |||| ||||||||||||||||| |||||||||||||    
T  12501556 gagatgaaaagaacatcatataagta-tgtgagagaaagttgtttaaaaattgtcaca 12501500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 21210336 - 21210290
Alignment:
Q  14 gagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattg 61  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||    
T  21210336 gagaataacatcatgtgagta-tgagagagaaagttgttcaaaaattg 21210290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 3339503 - 3339570
Alignment:
Q  24 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    ||||||||||| || ||||||||||||| ||||| |||||||   |||||||| |||||||||||||||    
T  3339503 tcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctc 3339570  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 12500024 - 12500099
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    ||||||||||| | |||| ||||||| |||||| || |||||||||||||   || |||||||||||||||||||||    
T  12500024 aagaacatcatataagta-tgtgagaaaaagttatttaaaaattgtcacaaaatgattgtgcaaatatcatttctca 12500099  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 12507353 - 12507428
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    ||||||||||| | |||| ||||||| |||||| || |||||||||||||   || |||||||||||||||||||||    
T  12507353 aagaacatcatataagta-tgtgagaaaaagttatttaaaaattgtcacaaaatgattgtgcaaatatcatttctca 12507428  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 12508877 - 12508802
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    ||||||||||| | |||| ||||||| |||||| || |||||||||||||   || |||||||||||||||||||||    
T  12508877 aagaacatcatataagta-tgtgagaaaaagttatttaaaaattgtcacaaaatgattgtgcaaatatcatttctca 12508802  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 25995507 - 25995440
Alignment:
Q  26 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 91  Q
    ||||||||| || ||||||||||||| ||||||||| ||||   ||||||| |||||||||||||||||    
T  25995507 atgtgagta-tgagagagaaagttgtacaaaaattgccacaaaatggttgtacaaatatcatttctcaa 25995440  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 2056857 - 2056783
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| ||||||||||||| || |||||||||| || ||||| ||||||||   ||||||| |||||||||||||||    
T  2056857 aagaccatcatgtgagta-tgagagagaaagtagtacaaaagttgtcacaaattggttgtacaaatatcatttctc 2056783  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 17417241 - 17417306
Alignment:
Q  26 atgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    ||||||||| || ||||||||||||| |||||||||||||   ||| |||| |||||||||||||||    
T  17417241 atgtgagta-tgagagagaaagttgtccaaaaattgtcacataatgattgtacaaatatcatttctc 17417306  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 33050257 - 33050182
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| ||||||||||||||||    
T  33050257 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctca 33050182  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 13437272 - 13437198
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||||||  ||||||||| || |||| |||||||||||||| ||||||||   |||||||||||||||||||||||    
T  13437272 aagaacacaatgtgagta-tgagagaaaaagttgttcaaaagttgtcacaaaatggttgtgcaaatatcatttctc 13437198  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 8326207 - 8326151
Alignment:
Q  9 gagatgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 66  Q
    ||||||| ||||||||||||||||| ||  ||||||||||||| |||| |||||||||    
T  8326207 gagatgataagaacatcatgtgagt-atcagagagaaagttgtgcaaacattgtcaca 8326151  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 30864414 - 30864488
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| |||||| |||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  30864414 aagaccatcatatgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 30864488  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 43079629 - 43079703
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    ||||| || ||||||||| || ||||||||||||| |||||||| |||||   ||||||| |||||||||||||||    
T  43079629 aagaatataatgtgagta-tgagagagaaagttgtccaaaaattatcacaaagtggttgtacaaatatcatttctc 43079703  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 44511213 - 44511139
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 89  Q
    |||||||||||||||||| ||  |||||||||||| ||||| |||||||   |||||||| | |||||||||||||    
T  44511213 aagaacatcatgtgagta-tgaaagagaaagttgtacaaaagttgtcacaaaatggttgtacgaatatcatttctc 44511139  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 2347062 - 2347131
Alignment:
Q  23 atcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    |||||||||||| || ||||||||||||| | ||| ||||||||   ||||||| ||||||||||||||||    
T  2347062 atcatgtgagta-tgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctca 2347131  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 42118715 - 42118766
Alignment:
Q  41 gagaaagttgttcaaaaattgtcaca--tggttgtgcaaatatcatttctca 90  Q
    |||| |||||| ||||||||||||||  ||||||| ||||||||||||||||    
T  42118715 gagagagttgtccaaaaattgtcacaaatggttgtacaaatatcatttctca 42118766  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 113690 - 113624
Alignment:
Q  26 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 90  Q
    ||||||||| ||||||||||||||||| |||| ||||||||   ||||||| ||||||||||||||||    
T  113690 atgtgagta-tgtgagagaaagttgttaaaaagttgtcacaaagtggttgtacaaatatcatttctca 113624  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 18669 - 18587
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaacaaaga 97  Q
    |||| ||||||||||||| || ||||||||||||| ||||| || |||||   ||||||| ||||||||||||||||| |||||    
T  18669 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttatcacaaattggttgtacaaatatcatttctcaataaaga 18587  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 249134 - 249213
Alignment:
Q  12 atgagaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 89  Q
    |||| |||| ||||||||||||| || ||||||||||||| ||||| || |||||   || ||||||||||||||||||||    
T  249134 atgataagaccatcatgtgagta-tgagagagaaagttgtacaaaagttatcacaaattgattgtgcaaatatcatttctc 249213  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 31297 - 31366
Alignment:
Q  17 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcattt 86  Q
    ||||||||||||||||||   |||||||||||||| ||||| |||| ||   |||||||| ||||||||||||    
T  31297 aagaacatcatgtgagta---tgagagaaagttgtccaaaagttgttacaaaatggttgtccaaatatcattt 31366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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