View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6948_high_19 (Length: 312)

Name: NF6948_high_19
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6948_high_19
NF6948_high_19
[»] chr4 (1 HSPs)
chr4 (18-312)||(40184943-40185236)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 40185236 - 40184943
Alignment:
Q  18 aaattcaccctcagcaaccttactttatgtgaagggatttttggtacagtccttgctatacgtttagcaaattggttaattattaatcccactacaatgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40185236 aaattcaccctcagcaaccttactttatgtgaagggatttttggtacagtccttgctatacgtttagcaaattggttaattattaatcccactacaatgc 40185137  T
Q  118 agtactggctatgtttgcaacccggtttccctacattctgaaaacgacgcaatctcgcagtcatgcattttagactctttaattgaaatcggacaatgca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40185136 agtactggctatgtttgcaacccggtttccctacattctgaaaacgacgcaatcacgcagtcatgcattttagactctttaattgaaatcggacaatgca 40185037  T
Q  218 aatttaacaatatagcaaatatattnnnnnnnnnttatcaaaatcggatgcccgaaattcccccgcaaaatatctctgaacacttgtgcatggtt 312  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40185036 aatttaacaatatagcaaatatatt-aaaaaaagttatcaaaatcggatgcccgaaattcccccgcaaaatttctctgaacacttgtgcatggtt 40184943  T

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