View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_high_21 (Length: 304)
Name: NF6948_high_21
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 39032912 - 39032655
Alignment:
| Q |
18 |
aagaatgtcaccgttagatctaaattggtggacatcatgggtggttggataaaaaagaaagagttgattaattgtagttgcaatnnnnnnnnctagcaac |
117 |
Q |
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| T |
39032912 |
aagaatgtcaccgttagatctaaattggtggacatcatgggtggttggataaaaaagaaagagtcgatt----gtagttgcaataaaaaaa-ctagcaac |
39032818 |
T |
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| Q |
118 |
aaggtcgtcatctttttgctagaaaatatgtcgagagaagtagcattatccttaaaattaacaagattgttaacttcattcaagaacaagccatacgcta |
217 |
Q |
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| T |
39032817 |
aaggtcgtcatctttttgctagaaa-tatgtcgcgagaagtagcattatccttaaaattaacaagattgttaacttcattcaagaacaagccatacgcta |
39032719 |
T |
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| Q |
218 |
atccataataacagtttttacctcattgattttcttttgatcttaacctcaacatcataaatat |
281 |
Q |
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| T |
39032718 |
atccataataacacttttaacctcatcggttttcttttgatcttaacctcaacatcataaatat |
39032655 |
T |
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