View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_high_24 (Length: 273)
Name: NF6948_high_24
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 53796040 - 53795785
Alignment:
| Q |
1 |
taacaataaactaccaacgaaactgaacaaaccgttaccttgttcaccttcggaaacggaaatatcaacgccgttcattgctagaatatcgataaggtca |
100 |
Q |
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| T |
53796040 |
taacaataaactaccaacgaaactgaacaaaccgttaccttgttcaccttcggaaacggaaatatcaacgccgttcattgctagaatatcgataaggtca |
53795941 |
T |
|
| Q |
101 |
gggtcgttgggaacgataacgtttgctctccggccatcaacggcggttagttgaaggacagaaccgtctttactgaacctaactcgttcaactttaccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53795940 |
gggtcgttgggaacgataacgtttgctctccggccatcaacggcggttagttgaaggacagaaccgtctttactgaacctaactcgttcaactttaccct |
53795841 |
T |
|
| Q |
201 |
tttttactgcgtttaaaaactcactgtaacgccactggctaccatcggggagatca |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53795840 |
tttttactgcgtttaaaaactcactgtaacgccactggctaccatcggggagatca |
53795785 |
T |
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