View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_high_26 (Length: 261)
Name: NF6948_high_26
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 30831138 - 30831362
Alignment:
| Q |
23 |
tgaatgcaacttatacatatcaataactggaatttcaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtgga |
122 |
Q |
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| T |
30831138 |
tgaatgcaacttatacatatcaataactggaatttgaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtgga |
30831237 |
T |
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| Q |
123 |
acggttgaaatctttccatctttagctaactcttgaactgatggtaccaaaagagaagttcctgatggattcttgaatttttccatcttcccctttgtta |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30831238 |
acggttgaaatctttccatctttagctaactcttgaactgatggtaccaaaagagaagttcctgatggattcttgaatttttccatctt-ccctttgtta |
30831336 |
T |
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| Q |
223 |
atattttgttttatcaagatgtgtct |
248 |
Q |
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| T |
30831337 |
atattttattttatcaagatgtgtct |
30831362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 30836564 - 30836739
Alignment:
| Q |
23 |
tgaatgcaacttatacatatcaataactggaatttcaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtgga |
122 |
Q |
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| T |
30836564 |
tgaatgcaacttatacatatcaataactggaatttgaaggttagtatcaacttcagagagaatcaagtcttgatgattaggctgaatgtatcttggtgga |
30836663 |
T |
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| Q |
123 |
acggttgaaatctttccatctttagctaactcttgaactgatggtaccaaaagagaagttcctgatggattcttga |
198 |
Q |
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| T |
30836664 |
acggttgaaatatttccatctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttga |
30836739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 30854395 - 30854486
Alignment:
| Q |
104 |
ctgaatgtatcttggtggaacggttgaaatctttccatctttagctaactcttgaactgatggtaccaaaagagaagttcctgatggattcttga |
198 |
Q |
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|||||| |||||||||||||| |||||||| ||| || ||||| |||||||||||||||||||||| |||||||||||| || || ||||||| |
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| T |
30854395 |
ctgaatatatcttggtggaactgttgaaattttt---tccttagccaactcttgaactgatggtaccagaagagaagttccagaggggttcttga |
30854486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 30841816 - 30841973
Alignment:
| Q |
38 |
catatcaataactggaatttcaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatcttt |
137 |
Q |
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|||||||||||||||||||||||| || ||| | ||||| | | ||| |||| ||| | || |||||| ||||||| |||||| |||||||||||| |
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| T |
30841816 |
catatcaataactggaatttcaagtatactattagcttcattgatgaccaattcttcatgttgagactgaatatatcttgctggaactgttgaaatcttt |
30841915 |
T |
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| Q |
138 |
ccatctttagctaactcttgaactgatggtaccaaaagagaagttcctgatggattcttga |
198 |
Q |
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|| ||||| || ||||| ||||||||||||| |||||||||||| || || ||||||| |
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| T |
30841916 |
---tccttagccaattcttggactgatggtaccagaagagaagttccagaggggttcttga |
30841973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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