View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_high_3 (Length: 525)
Name: NF6948_high_3
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 50424484 - 50423985
Alignment:
| Q |
18 |
ctaatatgcccaatgttgtcaacaatgacatttaatacatcaaaccatctctattagcacacacgacatctataagaacctatgagtcacttagaaacat |
117 |
Q |
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| T |
50424484 |
ctaatatgcccaatgttgtcaacaatgacattaaatacatcaaaccatctctattagcacacacgacatctataagaacctatgagtcacttggaaacat |
50424385 |
T |
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| Q |
118 |
cacacgttgcaatcccattttttgcacccaattcatggcattcaacaacgtaatagcttctccctcatgcaccaacatgttatgctgagaccaaccttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50424384 |
cacacgttgcaatcccattttttgcacccaattcatggcattcaacaacgtaatagcttctccctcatgcaccaacatgttatgctgagaccaaccttta |
50424285 |
T |
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| Q |
218 |
aatgctcgaacaaacatacattttatgcctcaaatacaacaaccaacgcgtgtgtaattctgtccacgaaaaaagcttgcatcgacactgcactgcatac |
317 |
Q |
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| T |
50424284 |
aatgctcgaacaaacatacattttatgcctcaaatacaacaaccaacgcgtgtgtgattctgtccacgaaaaaagcttgcatcgacactgcactgcatac |
50424185 |
T |
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| Q |
318 |
gcataatgtgtctgctactgctaatgtatgaatttctgttgttgttgctgctaccgttgtttcagcttcagctgatgttgtttctgcttatttcactcct |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50424184 |
gcataatgtgtctgctactgctaatgtatgaatttctgttgttgttgctgctaccgttgtttcagcttcagctgatgttgtttctacttatttcactcct |
50424085 |
T |
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| Q |
418 |
ctcaaatcgtgtaatggcgcgagcaccctaccatttagattgcggtgaaatgcataatacagataataaagcattaacatatttcattccatttcttctc |
517 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50424084 |
ctcaaatcgtgtaatggtgcgagcaccctaccatttagattgcggtgaaatgcataatacagataataaagcattaacatatttcattccatttcttctc |
50423985 |
T |
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