View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_high_4 (Length: 519)
Name: NF6948_high_4
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 37060304 - 37059817
Alignment:
| Q |
19 |
ctatgatgatataaaatctaacacttgatcttttatgaacttgaggcacacatgcaaaatgcaagcatagttttttgttgccttctaagtggacattaga |
118 |
Q |
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| T |
37060304 |
ctatgatgatataaaatctaacacttgatcttttatgaacttgaggcacacatgcaaaatgcaagcatagttttttgttgccttctaagtggacattaga |
37060205 |
T |
|
| Q |
119 |
gacattttgaaaaactccaccactaggaatctctccttctaaatcattgtaagagatgtttaaaagttgaaggacatgcaaattttgaagctcaatagga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37060204 |
gacattttgaaaaactccaccactaggaatctctccttctaaatcattgtaagagatgtttaaaagttgaaggacatgcaaattttgaagctcaatagga |
37060105 |
T |
|
| Q |
219 |
atgggtcctgagagtaggttggaggacaagtccaaagtttccaagcctttcacatctccaagagcttttggaatgtaacctgaaagcatattctgggaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37060104 |
atgggtcctgagagtaggttggaggacaagtccaaagtttccaagcctttcacatctccaagagcttttggaatgtaacctgaaagcatattctgggaca |
37060005 |
T |
|
| Q |
319 |
aaaacattttctccaagctcaaacagttgctgaatgagctggggatgtttccatacaattggttgttggaaaagtcaatggtggaaatggttgtcaattg |
418 |
Q |
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| T |
37060004 |
aaaacattttctccaagctcaaacagttgctgaatgagctggggatgtttccatacaattggttgttggaaaagtcaatggtggaaatggttgtcaattg |
37059905 |
T |
|
| Q |
419 |
cccaacttcaggtattggtccactcaacaagttctttgataagtttaatacattgctcaaagttggtatattgaggatttccacaggt |
506 |
Q |
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| T |
37059904 |
cccaacttcaggtattggtccactcaacaagttctttgataagtttaatacattgctcaaagttggtatattgaggatttccacaggt |
37059817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 37067780 - 37067293
Alignment:
| Q |
19 |
ctatgatgatataaaatctaacacttgatcttttatgaacttgaggcacacatgcaaaatgcaagcatagttttttgttgccttctaagtggacattaga |
118 |
Q |
| |
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||||||||||||||| ||| ||| |||||| |||| |||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37067780 |
ctatgatgatataaagtctgacatgtgatctcctatggacttgaggcacacatgaaaactgcaagcatagttttttattgccttctaagtggacattaga |
37067681 |
T |
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| Q |
119 |
gacattttgaaaaactccaccactaggaatctctccttctaaatcattgtaagagatgtttaaaagttgaaggacatgcaaattttgaagctcaatagga |
218 |
Q |
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|| |||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||| |||||| ||||||| ||||||||| |
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| T |
37067680 |
gagattttggaaaactccaccactaggaatgtctccttctagatcattgtaagagaggtttaaaagccgaaggacttgcaaactttgaagttcaatagga |
37067581 |
T |
|
| Q |
219 |
atgggtcctgagagtaggttggaggacaagtccaaagtttccaagcctttcacatctccaagagcttttggaatgtaacctgaaagcatattctgggaca |
318 |
Q |
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|| ||||| | ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||| | || |
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| T |
37067580 |
attggtcccgtgagtaggttggaggacaagtccaaagtttccaaagctctcacttctccaagagcttttggaatggaacctgaaagcatattccttgcca |
37067481 |
T |
|
| Q |
319 |
aaaacattttctccaagctcaaacagttgctgaatgagctggggatgtttccatacaattggttgttggaaaagtcaatggtggaaatggttgtcaattg |
418 |
Q |
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|||||| |||||||||||||||||| ||||||||||||| || ||| | ||||||||||||||||||||||||||||||| || |||||| ||||||| |
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| T |
37067480 |
aaaacaatttctccaagctcaaacaactgctgaatgagcttggaatgctgccatacaattggttgttggaaaagtcaatggaggcaatggtagtcaattt |
37067381 |
T |
|
| Q |
419 |
cccaacttcaggtattggtccactcaacaagttctttgataagtttaatacattgctcaaagttggtatattgaggatttccacaggt |
506 |
Q |
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|||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||||||| ||||| |
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| T |
37067380 |
cccaacttgaggtattggtccactcaacaagttcatagataagtttaaaacattgctcaaagttggtaggttgaggatttccgcaggt |
37067293 |
T |
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