View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_10 (Length: 374)
Name: NF6948_low_10
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 53118445 - 53118100
Alignment:
| Q |
11 |
gtgttgtataaagtaatgtacaatctgtttctttgttggcctataatatgctttattttcaannnnnnnnnnnnattcaaaatcatgttgtaatctcttt |
110 |
Q |
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| T |
53118445 |
gtgttggataaagtaatgtacaatctgtttctttgttggcctataatatgctttattttcaattttttgtttttattcaaaatcatgttgtaatctcttt |
53118346 |
T |
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| Q |
111 |
tcccttgttgaattgagcaaaaagatttgttggcatggtttggagttgcttaacagatattgaacataaaaatagttcagaaattggattacaatgtcat |
210 |
Q |
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| T |
53118345 |
tcccttgttgaattgagcaaaaagatttgttggcatggtttggagttgcttaacagatattgaacataaaaatagttcagaaattggattacaatgtcat |
53118246 |
T |
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| Q |
211 |
ctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtcatttgcttaataagttgtggttatgattctaagtttggtccatattgc |
310 |
Q |
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| T |
53118245 |
ctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtcatttgcttaataagttgtggttatgattctaagtttggt-catattgc |
53118147 |
T |
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| Q |
311 |
agcttgtaagctacattttggaagaaaaacgtgtcagtcctacattc |
357 |
Q |
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| T |
53118146 |
agcttgtaagctacattttggaagaaacacgtgtcagtcctacattc |
53118100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 357
Target Start/End: Complemental strand, 53108966 - 53108774
Alignment:
| Q |
164 |
cagatattgaacataaaaatagttcagaaattggattacaatgtcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtca |
263 |
Q |
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| T |
53108966 |
cagaaattgaacgtaaaaa-agttcagaaattggattaaaatgtgatctgatctgctttgcatagaaatatgggacattcttaactcacaatattagtca |
53108868 |
T |
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| Q |
264 |
tttgcttaataagttgtggtt-atgattctaagtttggtccatattgcagcttgtaagctacattttggaagaaaaacgtgtcagtcctacattc |
357 |
Q |
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| T |
53108867 |
tttgattaataagctgtggttaatgattctaagtttggt-cacattgcagcttgtcggacactttttggaagaaacatgtgtcaatcctacattc |
53108774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 53126921 - 53126861
Alignment:
| Q |
12 |
tgttgtataaagtaatgtacaatctgtttctttgttggcctataatatgctttattttcaa |
72 |
Q |
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| T |
53126921 |
tgttggataaagtaatgtacaatctgtttctttgttggcctataatatgctttattttcaa |
53126861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 53109091 - 53109037
Alignment:
| Q |
18 |
ataaagtaatgtacaatctgtttctttgttggcctataatatgctttattttcaa |
72 |
Q |
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| T |
53109091 |
ataaagtaatgtacaatctgtttctttgttggcctataatatgctttgttttcaa |
53109037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 53114522 - 53114466
Alignment:
| Q |
12 |
tgttgtataaagtaatgtacaatctgtttctttgttggcctataatatgctttattt |
68 |
Q |
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| T |
53114522 |
tgttggataaagtaattcacaatctgtttctttgttggcctataatatgctttattt |
53114466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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