View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_13 (Length: 357)
Name: NF6948_low_13
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 39934759 - 39935099
Alignment:
| Q |
1 |
accatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataagtgattttccggtaatcttatgccaacatggcaagagcaccctgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39934759 |
accatgccaagaacagtcaacacatgtcctgctcctattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgt |
39934858 |
T |
|
| Q |
101 |
caagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccgatccatgactaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934859 |
caagaaaagtgagaaaaatgggtgctgatattaagacaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaa |
39934958 |
T |
|
| Q |
201 |
agcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaagaccaaaaccaattgatattaataatatgcttatgtata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934959 |
agcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaagaccaaaaccaattgatattaataatatgcttatgtata |
39935058 |
T |
|
| Q |
301 |
aaactgtgtattggattcctgttggtggtttgcatgtgatg |
341 |
Q |
| |
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| T |
39935059 |
aaactgtgtattggattcctgttggtggtttgcatgtgatg |
39935099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 39695356 - 39695091
Alignment:
| Q |
1 |
accatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataagtgattttcc-ggtaatcttatgccaacatggcaagagcaccctg |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||| ||||| ||||||||||| ||| || ||||| ||| |
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| T |
39695356 |
accatgccaagaacagtcaacacatgtcctgctcctattcgttggagcggcataggc-attttcctggtaaccttatgccaacctggtaatagcactctg |
39695258 |
T |
|
| Q |
100 |
tcaagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccgatccatgacta |
199 |
Q |
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|||||||| ||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
39695257 |
tcaagaaatgtgaggaaaatgggtgctgatatcaagactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgacta |
39695158 |
T |
|
| Q |
200 |
aagcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaagacca |
266 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
39695157 |
aagcttgaagtacaaccaagcaactttggattgctattggagttgctaagaatatacttgaagacca |
39695091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 39704268 - 39704008
Alignment:
| Q |
1 |
accatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataagtgattttccggtaatcttatgccaacatggcaagagcaccctgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| || || |||||| | | |||||| ||||||||||||||||||||||| ||||| |||| |
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|
| T |
39704268 |
accatgccaagaacagtcaacacatgtcctactcctattcgttgaagtggcataggcgtttttccagtaatcttatgccaacatggcaatagcactctgt |
39704169 |
T |
|
| Q |
101 |
caagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccgatccatgactaa |
200 |
Q |
| |
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||||||| ||||| ||||||| || |||||||| ||| ||||||| |||||||| |||||| ||||| |||||||||||||| || ||||||||| |||| |
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| T |
39704168 |
caagaaaggtgaggaaaatggatgttgatattatgactataacagaaacagaaccagctggaattttgaaatggggtcctaatgagcgatccatggctaa |
39704069 |
T |
|
| Q |
201 |
agcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaa |
261 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||||||| || ||||||||||||| |
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| T |
39704068 |
agcttgaagtaccgtcacactactttggattgctattggagttgctaagaatatacttgaa |
39704008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 39929107 - 39929368
Alignment:
| Q |
1 |
accatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataagtgattttccggtaatcttatgccaacatggcaagagcaccctgt |
100 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||| |||| | |||||| || || | ||||||| ||||| ||||||||||| |||||| |||||||||| |
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| T |
39929107 |
accatgccaagaacattgaacacatgtcctactcctatttgatggagcagcttaggagattttctggtaaccttatgccaacttggcaatagcaccctgt |
39929206 |
T |
|
| Q |
101 |
caagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccgatccatgactaa |
200 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| ||||||| || ||||| ||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
39929207 |
caagaaaagtgaggaaaatgggtgctgatattaagactataacagaaatagaaccagctgggatttcaaaatggtatcctaaagaacgatccatgactaa |
39929306 |
T |
|
| Q |
201 |
agcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaag |
262 |
Q |
| |
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||||||||||| || ||| |||| ||| |||||||| |||||||||||| |||||||| |
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|
| T |
39929307 |
agcttgaagtataatgaagtccatttgcattactattggaattgataggaatagacttgaag |
39929368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 39930479 - 39930553
Alignment:
| Q |
263 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39930479 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgt |
39930553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 39692847 - 39692770
Alignment:
| Q |
263 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgat |
340 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39692847 |
accaaaaccaattgatattaacactatgcttatgtataaaactgtatattggattcctgttggtggtttgcatgtgat |
39692770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 39702820 - 39702742
Alignment:
| Q |
263 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatg |
341 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
39702820 |
accaaaaccaattgatattaggactatgcttatgtataaaactgtatattggattcctgttggtggtatgcatgtgatg |
39702742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 38061799 - 38062001
Alignment:
| Q |
16 |
gtcaacacatgtcctgctcatattcgctggagcggcataag-tgattttccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgaga |
114 |
Q |
| |
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|||||||||| ||| ||| |||||| |||||||||||| | | |||| |||| ||| ||| ||||| |||||| | ||| ||||||||||| ||||| |
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| T |
38061799 |
gtcaacacatagcctactcctattcgttggagcggcataggcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgagg |
38061898 |
T |
|
| Q |
115 |
aaaatgggtgctgatattaagac---aataacagcaacagaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagta |
211 |
Q |
| |
|
||||| | || ||||||||| || |||||||| |||||||| |||||||||||||||||| | ||||| ||| |||||||||| |||| ||||||||| |
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|
| T |
38061899 |
aaaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagta |
38061998 |
T |
|
| Q |
212 |
caa |
214 |
Q |
| |
|
||| |
|
|
| T |
38061999 |
caa |
38062001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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