View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_15 (Length: 340)
Name: NF6948_low_15
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 44262032 - 44262356
Alignment:
| Q |
1 |
tattgaaaattgtcaatgttgtgagatttccttggctgccaagagtttctttaatctctccagagtaaattggatgttccatggctcaagaacatctagt |
100 |
Q |
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| T |
44262032 |
tattgaaaagtatcaatgttgtgagatttccttggctgccaagagtttctttaatctctccagagtaaattggatgttccatggctcaagaacatctagt |
44262131 |
T |
|
| Q |
101 |
cgaggcgtctataaggaagtggaacttccaagctcctcgggatggatgcatttaaggttgtaagtatccttgaccttccaatagtgaaattattgcttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44262132 |
cgaggcgtctataaggaagtggaacttccaagctccttgggatggatgcatttaaggttgtaagtatccctgaccttccaatagtgaaattattgcttat |
44262231 |
T |
|
| Q |
201 |
ctaaaaaatgttcagtgtggtgagattttccatggattttgacaatggtgatgaaaaagtgttgcaacataagctaagagaggttagactttaaagtgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44262232 |
ctaaaaaatgttcagtgtggtgagattttccatggattttgacaatggtgatgaaaaagtgttgcaacagaagctaagagaggttagactttaaagtgtt |
44262331 |
T |
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| Q |
301 |
tctatatcattggatattgtaccac |
325 |
Q |
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||||||||||||||||||| ||||| |
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| T |
44262332 |
tctatatcattggatattgaaccac |
44262356 |
T |
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