View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_16 (Length: 331)
Name: NF6948_low_16
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 51360704 - 51360393
Alignment:
| Q |
1 |
tactttcttgttgactgtcgttggagggttcatctccgatacatatatgaatcgtctcaacacatgcatcctctttggcataattcagttgttggtaaag |
100 |
Q |
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| T |
51360704 |
tactttcttgttgactgtcgttggagggttcatctccgatacatatatgaatcgtctcaacacatgcatcctctttggcataattcagttgttggtaaag |
51360605 |
T |
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| Q |
101 |
tattacgttaaacaagttcgttatttgattaacttactcaagacattgacttgatgttagtattttttgaattgcagggatacgccttacttgtgattca |
200 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51360604 |
tattacattaaacaagttcattatttgattaacttactcaagacattgacttgatgttagtattttttgaattgcagggatacgccttacttgtgattca |
51360505 |
T |
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| Q |
201 |
atcccatgatgagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttcaatatacttgcttgca |
300 |
Q |
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| T |
51360504 |
atcccatgatgagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttcaatatacttgcttgca |
51360405 |
T |
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| Q |
301 |
cttggtggtggt |
312 |
Q |
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|||||||||||| |
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| T |
51360404 |
cttggtggtggt |
51360393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 51351145 - 51351024
Alignment:
| Q |
189 |
acttgtgattcaatcccatgatgagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttcaata |
288 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||| |||||||| | |||||||| |||| |||||||||||| ||||||||||||| ||| |
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| T |
51351145 |
acttgtgattcaatcccatgctgagaaacttcagccacaact--gtggaaaacaaagttgtttgcatgtcacaaaagctttgttcttctacgcttcgata |
51351048 |
T |
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| Q |
289 |
tacttgcttgcacttggtggtggt |
312 |
Q |
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| T |
51351047 |
tacttgcttgcacttggtggtggt |
51351024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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