View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_18 (Length: 312)
Name: NF6948_low_18
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 7274214 - 7273939
Alignment:
| Q |
20 |
caaagacaatggttagcattctccttagaaataatat----agtaaataaatatacccaatctatgtccactttaatttgctcattcattggtgcacata |
115 |
Q |
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| T |
7274214 |
caaagacaatggttaacattctcttttgaaataatatgagtagtaaataaatatacccaatctatgtcgactttaatttgctcattcattggtgcacata |
7274115 |
T |
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| Q |
116 |
cttnnnnnnnnnnnnncaaacaaactgatttgccactttgacattaaatatgttggcctttcaaacaaagtttttcgagaaagggaatcagaatcagaga |
215 |
Q |
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| T |
7274114 |
cttaaaaaaagaaaaacaaacaaactgatttgccactttgacattaaatatgttggcctttcaaacaaagtttttcgagaaagggaatcagaatcagaga |
7274015 |
T |
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| Q |
216 |
ttgttgagtttataagtggctaactggctatggctattagatttgtaccacatgcactggacagtggtgaccactt |
291 |
Q |
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| T |
7274014 |
ttgttgagtttataagtggctaactggctatggctattagatttgtaccacatgcactggacagtggtgaccactt |
7273939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 7270637 - 7270541
Alignment:
| Q |
160 |
taaatatgttggcctttcaaacaaagtttttcgagaaagggaatcagaatcagaga------ttgttgagtttataagtggctaactggctatggctat |
252 |
Q |
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|||| ||||||| ||||||||||||| |||||||||| | ||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
7270637 |
taaagatgttggactttcaaacaaaggttttcgagaatgagaatcagaaacagagacagagattgttgagtttataagtggcta--tggctatggctat |
7270541 |
T |
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