View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_22 (Length: 284)
Name: NF6948_low_22
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 16506733 - 16506461
Alignment:
| Q |
1 |
tatatcacatagatgtttgattatgatttctctagcagtagcagttttattttctgattcttgaaaatacaatgtaggaggcactgtaatcaatgtagga |
100 |
Q |
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| T |
16506733 |
tatatcacatagatgtttgattatgatttctctagcagtagcagttttattttcttattcttgaaaatacaatgtaggaggcactgtaatcaatgtagga |
16506634 |
T |
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| Q |
101 |
gaatgaaaatttgtggtaggaggtgcatacgccatgaaagtaatatccttggtagcaaacccaaaataggtt-----atcaatgcttcttgaactctcag |
195 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16506633 |
gaatgaaaatttgtggtaggagatgcatacgccatgaaagtaatatccttggtagcaaacccaaaataggttatcatatcaatgcttcttgaactctcag |
16506534 |
T |
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| Q |
196 |
tacatagttaatgggaccttcaaggtatactgatttaaaagtagggtattaacctgatataagtatgggtgat |
268 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
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| T |
16506533 |
tacatagttaatgggaccttgaaggtatactgatttaaaagtagggtatcaacctgctataagtaagggtgat |
16506461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 16497790 - 16497712
Alignment:
| Q |
1 |
tatatcacatagatgtttgattatgatttctctagcagtagcagttttattttctgattcttgaaaatacaatgtagga |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16497790 |
tatatcacatagatgtttgattatgatttctctagcagtagcagttttattttctgattcttgaaaatacaatgtagga |
16497712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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