View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_23 (Length: 283)
Name: NF6948_low_23
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 7561415 - 7561229
Alignment:
| Q |
43 |
aagaacaagaacaacaatttgtgctgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcgaggatgaccgctgt |
142 |
Q |
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| T |
7561415 |
aagaacaagaacaacaatttgtgctgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcgaggatgaccgctgt |
7561316 |
T |
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| Q |
143 |
tttgagtctctctccgtcgtctctaaacagtttctctctatcaccaacagtttctcgctatttatgcagtccacaaaagttgaatatatggactccatat |
242 |
Q |
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| T |
7561315 |
ttaga-------------gtctctaaacagtttctctctatcaccaacagtttctcgctatttatgcagtccacaaaagttgaatatatggactccatat |
7561229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 190
Target Start/End: Complemental strand, 7555572 - 7555450
Alignment:
| Q |
68 |
gctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcgaggatgaccgctgttttgagtctctctccgtcgtctcta |
167 |
Q |
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| T |
7555572 |
gctgctttttatttacccgatgaatgttggcaacttgtcttcaaatttctcaacaacggtgacgacaaccgttatttgaagactctctccctcgtttcca |
7555473 |
T |
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| Q |
168 |
aacagtttctctctatcaccaac |
190 |
Q |
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| T |
7555472 |
aacagtttctctctatcaccaac |
7555450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 9581994 - 9581951
Alignment:
| Q |
147 |
agtctctctccgtcgtctctaaacagtttctctctatcaccaac |
190 |
Q |
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| T |
9581994 |
agtctctttctgtcgtctccaaacagtttctctctatcaccaac |
9581951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 44575182 - 44575224
Alignment:
| Q |
147 |
agtctctctccgtcgtctctaaacagtttctctctatcaccaa |
189 |
Q |
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| T |
44575182 |
agtctctctccatcgtctcaaaacagtttctctcaatcaccaa |
44575224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 566795 - 566758
Alignment:
| Q |
74 |
ttttatttacctgatgactgttggaaacatgtcttcaa |
111 |
Q |
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| T |
566795 |
ttttatttacctgatgactgttgggaacgtgtcttcaa |
566758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 2525815 - 2525771
Alignment:
| Q |
149 |
tctctctccgtcgtctctaaacagtttctctctatcaccaacagt |
193 |
Q |
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| T |
2525815 |
tctctctccctcgtctcaaaacagtttctgtccatcaccaacagt |
2525771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 6007723 - 6007679
Alignment:
| Q |
149 |
tctctctccgtcgtctctaaacagtttctctctatcaccaacagt |
193 |
Q |
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| T |
6007723 |
tctctctccctcgtctcgaaacagttcctctccatcaccaacagt |
6007679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 15091356 - 15091400
Alignment:
| Q |
149 |
tctctctccgtcgtctctaaacagtttctctctatcaccaacagt |
193 |
Q |
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| T |
15091356 |
tctctctccctcgtctccaaacagttcctctccatcaccaacagt |
15091400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 9412499 - 9412443
Alignment:
| Q |
70 |
tgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatgg |
126 |
Q |
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| T |
9412499 |
tgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacgatgg |
9412443 |
T |
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