View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_26 (Length: 261)
Name: NF6948_low_26
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_26 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 39033183 - 39032936
Alignment:
| Q |
13 |
aatattactaaaatgataaaaaggagatatgatgcaatatattagctgtttgacaaattgatggccagtgattctgtggttagcctggtagtggtatcat |
112 |
Q |
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| T |
39033183 |
aatattactaaaatgataaaaaggagatatgatgcaatatattagctgtttgacaaattgatggccagtgattctgtggttagcctggtactggtatcat |
39033084 |
T |
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| Q |
113 |
tcatagacaattacctcctgaggtattaaattacattttaaccatcttatttatgtaccaaattttcattaatttcagccataataacctggataacgta |
212 |
Q |
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| T |
39033083 |
tcatagacaattacctcctgaggtattaaattacattttaaccatctta-ttatgtaccaaattttcattaatttcagcctgaataacctggataacgta |
39032985 |
T |
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| Q |
213 |
ctcgtgctatcattaaaattagggcatattgctattgatagcaaagtaa |
261 |
Q |
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| T |
39032984 |
ctcgtgctatcattaaaattagggcatattgctattgatagcaaagtaa |
39032936 |
T |
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