View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_28 (Length: 250)
Name: NF6948_low_28
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 6843211 - 6843436
Alignment:
| Q |
8 |
ttggtgttagcccaatgaaggtgtaaacatggcaaacattgttgaaagttcttcaaaaacagattgggatcgcgaaaaatagattggaatccaaagagtt |
107 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6843211 |
ttggtgttagcccaatgaaggtgtaaacatggcaaccattgtcgaaagttcttcaaaaacagattgggatcgcgaaaaatagattggaatccagagagtt |
6843310 |
T |
|
| Q |
108 |
actaataacaaaacaagaagacaccactgctaattgaaactgaagtatccttcattagtttaatatgtaattatgataaggaggttaaggattctatctc |
207 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
6843311 |
actaatgacaaaacaagaagacgccactgctaattgaaactgaagtatccttcattagtttaatctgtaataatgataaggaggttaaggattctatctc |
6843410 |
T |
|
| Q |
208 |
caccaacaatatacatgactaacatt |
233 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
6843411 |
caccaacaatatacatgactaacatt |
6843436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 9661784 - 9661559
Alignment:
| Q |
8 |
ttggtgttagcccaatgaaggtgtaaacatggcaaacattgttgaaagttcttcaaaaacagattgggatcgcgaaaaatagattggaatccaaagagtt |
107 |
Q |
| |
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||||||||||| |||||||||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
9661784 |
ttggtgttagctcaatgaaggtatcaacatggcaaccattgttgaaagttcttcgaaaacagattgggatcgcgaaaaacagattggaatccagagagtt |
9661685 |
T |
|
| Q |
108 |
actaataacaaaacaagaagacaccactgctaattgaaactgaagtatccttcattagtttaatatgtaattatgataaggaggttaaggattctatctc |
207 |
Q |
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|
|||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
9661684 |
actaatgacaaaacaagaagaagccactgctaattgaaattgaagtatccttcattagtttaatctgtaataatgataaggaggttaaggattctatctc |
9661585 |
T |
|
| Q |
208 |
caccaacaatatacatgactaacatt |
233 |
Q |
| |
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|||| ||||||||||||||||||||| |
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| T |
9661584 |
cacctacaatatacatgactaacatt |
9661559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 34826546 - 34826321
Alignment:
| Q |
8 |
ttggtgttagcccaatgaaggtgtaaacatggcaaacattgttgaaagttcttcaaaaacagattgggatcgcga-aaaatagattggaatccaaagagt |
106 |
Q |
| |
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||||||||||||| | |||||||| |||||||| | ||||||||||||||||| |||||||||||| || | | |||| | ||||||||||||||||| |
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| T |
34826546 |
ttggtgttagccccaggaaggtgtcaacatggcgaccattgttgaaagttctttgaaaacagattggaatggtggcaaaacaaattggaatccaaagagt |
34826447 |
T |
|
| Q |
107 |
tactaataacaaaacaagaagacaccactgctaattgaaactgaagtatccttcattagtttaatatgtaattatgat-aaggaggttaaggattctatc |
205 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||| || ||||||||||||||||||| |||||| ||||| || |||||||||| ||||||| |
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| T |
34826446 |
cactaatgacaa--caagaagaagccactgctaattgaaactaaactatccttcattagtttaatctgtaataatgataaatgaggttaagggttctatc |
34826349 |
T |
|
| Q |
206 |
tccaccaacaatatacatgactaacatt |
233 |
Q |
| |
|
|||||||| |||||| |||| ||||||| |
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|
| T |
34826348 |
tccaccaataatatatatgaataacatt |
34826321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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