View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_29 (Length: 249)
Name: NF6948_low_29
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 53796376 - 53796134
Alignment:
| Q |
7 |
tgaaaagaacggtgtaccagcttcaccggccactgccctcgccaacaatgtctttccagttccaggtggccccactaaaagacatcctttaggaatctta |
106 |
Q |
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| T |
53796376 |
tgaaaagaacggtgtaccagcttcaccggccactgccctcgccaacaatgtctttccagttccaggtggccccactaaaagacatcctttaggaatctta |
53796277 |
T |
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| Q |
107 |
gcgcctaaagcagtgtacttatcaggattcttcaagaaatcaacaacttcttgtagttccaatttcgcttgatcagcaccggccacatcagcaaaagtta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53796276 |
gcgcctaaagcagtgtacttatcaggattcttcaagaaatcaacaacttcttgtagttccaatttcgcttgatcagcaccggccacatcagcaaaagtta |
53796177 |
T |
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| Q |
207 |
ctccagtctctggtacttcctggaatttagatttcgatctacc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53796176 |
ctccagtctctggtacttcctggaatttagatttcgatctacc |
53796134 |
T |
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