View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_32 (Length: 245)
Name: NF6948_low_32
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 38933042 - 38933290
Alignment:
| Q |
1 |
gctggcagaatgttctttgttttttcatggctaattgtggaaactggcgttagcatagtgacatttggtgtatgtt-----------------tggccaa |
83 |
Q |
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| T |
38933042 |
gctggcaggatgtt-tttgttttatcatggctaattgtggaaactggcgttagcatactgacatttagtgtatgtttggattgatagtgtgtttggccaa |
38933140 |
T |
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| Q |
84 |
atcaaagtgtgacatcgtgattatgacaaaagttacactttagaacttcaacaaaatcaagatgccacaaattttttgtcaaactcgtcctgattccaaa |
183 |
Q |
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| T |
38933141 |
atcaaagtgtgacatcgtgattatgaccaaagttacactttagagcttcaacaaaatcaagatgtcacaatttttttgtcaaactcgtcctgattccaaa |
38933240 |
T |
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| Q |
184 |
catttaattattattccttgcaaacttcattttgtagaaacaccagttca |
233 |
Q |
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| T |
38933241 |
catttaattattattccttgcaaacttcattttgtagaaacaccagttca |
38933290 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 30007538 - 30007497
Alignment:
| Q |
101 |
tgattatgacaaaagttacactttagaacttcaacaaaatca |
142 |
Q |
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| T |
30007538 |
tgattttgacaaaagttacactttcgagcttcaacaaaatca |
30007497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 24627167 - 24627139
Alignment:
| Q |
114 |
agttacactttagaacttcaacaaaatca |
142 |
Q |
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| T |
24627167 |
agttacactttagaacttcaacaaaatca |
24627139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 23186927 - 23186895
Alignment:
| Q |
110 |
caaaagttacactttagaacttcaacaaaatca |
142 |
Q |
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| T |
23186927 |
caaaagttacactttagagcttcaacaaaatca |
23186895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 8110886 - 8110921
Alignment:
| Q |
110 |
caaaagttacactttagaacttcaacaaaatcaagat |
146 |
Q |
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| T |
8110886 |
caaaagttacactt-agaacttcaacaaaatcaagat |
8110921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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