View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_34 (Length: 237)
Name: NF6948_low_34
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 44261786 - 44261992
Alignment:
| Q |
21 |
catgaaaacttgaaggtttggaatataaagaatggtggaagggttagaagaatggagaatgtttcttgacagatcaatgaaagaaagtgatctggaagaa |
120 |
Q |
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| T |
44261786 |
catgaaaacttgaaggtttggaatataaagaatggtggaagggttagaagaatggagtatgtttcttgacagatcaatgaaagaaagtgatctggaagaa |
44261885 |
T |
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| Q |
121 |
ggaatttcatctggagttccactagtgcgactattgttagccaagaccaaccacatgaactgtcatggaaacaaaatttgttctgaattcgaataccaac |
220 |
Q |
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| T |
44261886 |
ggaatttcatctggagttccactagtgcgactattgttagccaagaccaaccacatgaactgtcatggaaacaaaatttgttctgaattcgaataccaac |
44261985 |
T |
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| Q |
221 |
accaaac |
227 |
Q |
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| T |
44261986 |
aacaaac |
44261992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 44259505 - 44259582
Alignment:
| Q |
21 |
catgaaaacttgaaggtttggaatataaagaatggtggaagggttagaagaatggagaatgtttcttgacagatcaat |
98 |
Q |
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| T |
44259505 |
catgaaaacttgaatgtttggaatgtaaagaatggaggaagggagagaagaaaggagtttgtttcttgacagatcaat |
44259582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 44254178 - 44254285
Alignment:
| Q |
35 |
ggtttggaatataaagaatggtggaagggttagaagaatggagaatgtttcttgacagatcaatgaaagaaagtgatctggaagaaggaatttcatctgg |
134 |
Q |
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| T |
44254178 |
ggtttggaatgtaaagaatggtgaaagggagagaagaatggagtttgtttcttgtgacatcaatggaagaaagtggtatggaagaaggaatgttatcttg |
44254277 |
T |
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| Q |
135 |
agttccac |
142 |
Q |
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| T |
44254278 |
aattccac |
44254285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 39469179 - 39469314
Alignment:
| Q |
23 |
tgaaaacttgaaggtttggaatataaagaatggtggaagggttagaagaatggagaatgtttcttgacagatcaatgaaagaaagtgatctggaagaagg |
122 |
Q |
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| T |
39469179 |
tgaaaacttgaagatttggaatggatagaatggtggaagggagaaaagaatgaagtttgtttcttgagagatcaatgaaagaaagtgacatggaagaagg |
39469278 |
T |
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| Q |
123 |
aatttcatctggagttccactagtgcgactattgtt |
158 |
Q |
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| T |
39469279 |
aatatcatctggaatttcaccagtgagactattgtt |
39469314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 30088744 - 30088631
Alignment:
| Q |
51 |
aatggtggaagggttagaagaatggagaatgtttcttgacagatcaatgaaagaaagtgatctggaagaaggaatttcatctggagttccactagtgcga |
150 |
Q |
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| T |
30088744 |
aatggtggaaggaagagaagagtggaggttgtttctggagaaatcaatgaacgaaagagatgtggaagaagcaatgtcctcaggaattccaccagtgaga |
30088645 |
T |
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| Q |
151 |
ctattgttagccaa |
164 |
Q |
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| T |
30088644 |
ctattgttagccaa |
30088631 |
T |
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