View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6948_low_36 (Length: 231)

Name: NF6948_low_36
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6948_low_36
NF6948_low_36
[»] chr4 (2 HSPs)
chr4 (88-195)||(13464189-13464296)
chr4 (42-86)||(47926642-47926686)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-86)||(18999-19084)
[»] chr1 (2 HSPs)
chr1 (1-86)||(51720389-51720474)
chr1 (30-86)||(163714-163770)
[»] chr3 (4 HSPs)
chr3 (30-86)||(52174282-52174338)
chr3 (30-80)||(52176256-52176306)
chr3 (30-84)||(39084668-39084722)
chr3 (42-86)||(34132384-34132428)
[»] chr7 (5 HSPs)
chr7 (28-86)||(34368311-34368369)
chr7 (30-86)||(25148569-25148625)
chr7 (30-86)||(45235192-45235248)
chr7 (154-195)||(14079856-14079896)
chr7 (154-195)||(14389884-14389924)
[»] chr5 (1 HSPs)
chr5 (42-86)||(13449941-13449985)
[»] chr2 (2 HSPs)
chr2 (14-86)||(19029289-19029361)
chr2 (42-86)||(35410382-35410426)
[»] chr8 (1 HSPs)
chr8 (42-86)||(9863605-9863649)
[»] chr6 (1 HSPs)
chr6 (42-86)||(32456166-32456210)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 13464189 - 13464296
Alignment:
Q  88 ccattaaacaacaacttaaaagcatgtgaataaaagcaatataacaaatgcaataacattgtgtataactcgaaacactcaccaaaaacacaggaccact 187  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13464189 ccattaaacaacaacttaaaagcatgtgaataaaagcaatatgagaaatgcaataacattgtgtataactcgaaacactcaccaaaaacacaggaccact 13464288  T
Q  188 tccacgcc 195  Q
    ||||||||    
T  13464289 tccacgcc 13464296  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 47926642 - 47926686
Alignment:
Q  42 ttgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||    
T  47926642 ttgtgtatcatgcacaaatttaatacttgtgcattgtaaacgcca 47926686  T

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Target: scaffold0027 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 18999 - 19084
Alignment:
Q  1 aaaaaacgggggcgactggctagaaccgattttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  18999 aaaaaacggggacgactggctagaaccggttttgaagggaattgtctatcatgcacaaatttaatgtttgtggattgtaaacgcca 19084  T

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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 51720389 - 51720474
Alignment:
Q  1 aaaaaacgggggcgactggctagaaccgattttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  51720389 aaaaaacggggacgactggctagaactggttttgaagggaattgtctatcatgcacaaatttaatgtttgtggattgtaaacgcca 51720474  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 163714 - 163770
Alignment:
Q  30 ttttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||| ||||| || |||||||||||||||||||||  |||||  ||||||||||||    
T  163714 ttttggaggcatttatgtatcatgcacaaatttaatagttgtgcgttgtaaacgcca 163770  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 52174282 - 52174338
Alignment:
Q  30 ttttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  52174282 ttttggaggcatttgtgtatcatgcacaaattttatgtttgtgtattgtaaacgcca 52174338  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 52176256 - 52176306
Alignment:
Q  30 ttttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaa 80  Q
    ||||| ||||| ||||| ||||||||||||||| |||||||||||||||||    
T  52176256 ttttggaggcatttgtgcatcatgcacaaattttatgtttgtgtattgtaa 52176306  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 39084668 - 39084722
Alignment:
Q  30 ttttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgc 84  Q
    ||||||||| | || ||||||||||||||||||||| |||||| || ||||||||    
T  39084668 ttttgaaggtatttatgtatcatgcacaaatttaatatttgtgcatcgtaaacgc 39084722  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 34132428 - 34132384
Alignment:
Q  42 ttgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||| ||||||||||||||||||  ||||| |||||||||||||    
T  34132428 ttgtgcatcatgcacaaatttaatagttgtgcattgtaaacgcca 34132384  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 34368369 - 34368311
Alignment:
Q  28 gattttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  34368369 gattttggaggcatttgtgtatcatgcacaaattttatgtttgtgtagtgtaaacgcca 34368311  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 25148625 - 25148569
Alignment:
Q  30 ttttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||||||| | || ||||||||||||||||||||| |||||| |||||||||||||    
T  25148625 ttttgaaggtatttatgtatcatgcacaaatttaatatttgtgcattgtaaacgcca 25148569  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 45235192 - 45235248
Alignment:
Q  30 ttttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||| ||||| ||||||||||||||||||||||||  ||||  |||||||||||||    
T  45235192 ttttggaggcatttgtgtatcatgcacaaatttaatagttgtacattgtaaacgcca 45235248  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 14079896 - 14079856
Alignment:
Q  154 aactcgaaacactcaccaaaaacacaggaccacttccacgcc 195  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  14079896 aactcgaaacacttaccaaaa-cacaggaccacttccacgcc 14079856  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 14389924 - 14389884
Alignment:
Q  154 aactcgaaacactcaccaaaaacacaggaccacttccacgcc 195  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  14389924 aactcgaaacacttaccaaaa-cacaggaccacttccacgcc 14389884  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 13449985 - 13449941
Alignment:
Q  42 ttgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||    
T  13449985 ttgtgtatcatgcacaaatttaatacttgtgcattgtaaacgcca 13449941  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 19029361 - 19029289
Alignment:
Q  14 gactggctagaaccgattttgaaggcaattgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||||||  |||| |||||  ||||| ||| |||||||||||||||||||  |||||| |||||||||||||    
T  19029361 gactggctgcaaccaattttagaggcatttgggtatcatgcacaaatttaacatttgtgcattgtaaacgcca 19029289  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 35410426 - 35410382
Alignment:
Q  42 ttgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    |||||||||||||||||||||||| | |||| |||||||||||||    
T  35410426 ttgtgtatcatgcacaaatttaatatgtgtgcattgtaaacgcca 35410382  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 9863649 - 9863605
Alignment:
Q  42 ttgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||| ||||||||||||||||||  ||||| |||||||||||||    
T  9863649 ttgtgcatcatgcacaaatttaatagttgtgcattgtaaacgcca 9863605  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 32456166 - 32456210
Alignment:
Q  42 ttgtgtatcatgcacaaatttaatgtttgtgtattgtaaacgcca 86  Q
    ||||||||||||||||||||||||  || || |||||||||||||    
T  32456166 ttgtgtatcatgcacaaatttaatacttatgcattgtaaacgcca 32456210  T

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