View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6948_low_37 (Length: 229)

Name: NF6948_low_37
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6948_low_37
NF6948_low_37
[»] chr5 (24 HSPs)
chr5 (13-80)||(15674106-15674173)
chr5 (13-80)||(33347203-33347270)
chr5 (89-137)||(41709389-41709437)
chr5 (13-80)||(14088182-14088249)
chr5 (21-80)||(32302316-32302375)
chr5 (19-72)||(19254621-19254674)
chr5 (24-80)||(35935225-35935281)
chr5 (29-72)||(6277958-6278001)
chr5 (21-80)||(16186681-16186740)
chr5 (30-85)||(30774714-30774769)
chr5 (18-80)||(29455704-29455766)
chr5 (30-72)||(38309696-38309738)
chr5 (18-72)||(41692600-41692654)
chr5 (29-85)||(15023458-15023514)
chr5 (30-85)||(3049899-3049954)
chr5 (29-72)||(4902084-4902127)
chr5 (21-80)||(6092748-6092807)
chr5 (13-72)||(10937342-10937401)
chr5 (13-80)||(14087577-14087644)
chr5 (13-80)||(14645229-14645295)
chr5 (13-80)||(15719309-15719376)
chr5 (29-72)||(34718927-34718970)
chr5 (13-79)||(6224960-6225026)
chr5 (43-80)||(18480354-18480391)
[»] chr2 (20 HSPs)
chr2 (16-80)||(41935656-41935720)
chr2 (17-72)||(29546228-29546283)
chr2 (20-72)||(18974633-18974685)
chr2 (19-80)||(3329100-3329161)
chr2 (18-78)||(20936958-20937018)
chr2 (29-76)||(2656711-2656758)
chr2 (13-72)||(35048540-35048599)
chr2 (13-80)||(38620301-38620368)
chr2 (18-80)||(29221323-29221385)
chr2 (18-80)||(29334622-29334684)
chr2 (13-85)||(8027580-8027653)
chr2 (20-80)||(25667376-25667436)
chr2 (13-72)||(4289557-4289616)
chr2 (13-80)||(15234219-15234286)
chr2 (13-80)||(31440764-31440831)
chr2 (29-72)||(40475392-40475435)
chr2 (29-72)||(40507739-40507782)
chr2 (18-80)||(4480971-4481033)
chr2 (33-79)||(12345642-12345688)
chr2 (13-80)||(44070533-44070601)
[»] chr4 (32 HSPs)
chr4 (17-80)||(11034618-11034681)
chr4 (19-80)||(22829672-22829733)
chr4 (19-90)||(52013720-52013791)
chr4 (13-80)||(1758101-1758168)
chr4 (13-80)||(12185701-12185768)
chr4 (13-80)||(12187693-12187760)
chr4 (13-72)||(28234293-28234352)
chr4 (29-80)||(39804193-39804244)
chr4 (12-70)||(7261955-7262013)
chr4 (18-72)||(29405999-29406053)
chr4 (19-72)||(22247802-22247855)
chr4 (20-72)||(46080648-46080700)
chr4 (13-80)||(3387337-3387404)
chr4 (13-80)||(14576714-14576781)
chr4 (29-80)||(26340384-26340435)
chr4 (29-72)||(45097492-45097535)
chr4 (19-82)||(50982075-50982138)
chr4 (13-72)||(53140541-53140600)
chr4 (22-92)||(22306933-22307003)
chr4 (18-80)||(31786342-31786404)
chr4 (30-80)||(52802404-52802454)
chr4 (18-85)||(38000514-38000582)
chr4 (29-85)||(39485272-39485328)
chr4 (29-72)||(2721370-2721413)
chr4 (21-80)||(21297390-21297449)
chr4 (13-80)||(42053389-42053456)
chr4 (13-80)||(42755263-42755330)
chr4 (13-51)||(652196-652234)
chr4 (30-80)||(24486493-24486543)
chr4 (13-90)||(23147326-23147403)
chr4 (27-80)||(46258110-46258163)
chr4 (13-85)||(22313476-22313548)
[»] chr1 (34 HSPs)
chr1 (17-72)||(31646431-31646486)
chr1 (13-80)||(48796449-48796516)
chr1 (19-80)||(29426436-29426496)
chr1 (19-80)||(48985054-48985115)
chr1 (18-80)||(48662570-48662632)
chr1 (13-80)||(42069246-42069313)
chr1 (19-80)||(32133411-32133472)
chr1 (13-72)||(4893421-4893480)
chr1 (21-80)||(8981695-8981754)
chr1 (13-72)||(20414888-20414947)
chr1 (89-136)||(23405722-23405769)
chr1 (13-72)||(29185007-29185066)
chr1 (18-80)||(2978331-2978393)
chr1 (18-80)||(14106232-14106294)
chr1 (18-80)||(35978642-35978704)
chr1 (18-72)||(39026661-39026715)
chr1 (21-85)||(945387-945451)
chr1 (18-70)||(12560704-12560756)
chr1 (28-80)||(40094653-40094705)
chr1 (13-80)||(13312645-13312712)
chr1 (13-80)||(25815455-25815522)
chr1 (13-80)||(28220880-28220947)
chr1 (29-80)||(30489578-30489629)
chr1 (29-72)||(33363040-33363083)
chr1 (29-80)||(34320861-34320912)
chr1 (13-80)||(35739140-35739207)
chr1 (13-79)||(4052494-4052560)
chr1 (18-72)||(48514352-48514406)
chr1 (20-85)||(9472855-9472920)
chr1 (23-80)||(48964512-48964569)
chr1 (18-78)||(2501487-2501547)
chr1 (20-80)||(19996811-19996871)
chr1 (13-69)||(47662198-47662254)
chr1 (18-58)||(50099747-50099787)
[»] chr8 (20 HSPs)
chr8 (21-80)||(38019961-38020020)
chr8 (89-138)||(44761822-44761871)
chr8 (89-137)||(44765129-44765177)
chr8 (18-80)||(37226906-37226968)
chr8 (13-80)||(3616993-3617060)
chr8 (13-80)||(7579970-7580037)
chr8 (13-80)||(19643642-19643709)
chr8 (18-80)||(221895-221958)
chr8 (18-80)||(691050-691113)
chr8 (18-80)||(735518-735581)
chr8 (18-80)||(859414-859477)
chr8 (18-80)||(34776863-34776925)
chr8 (31-80)||(2472427-2472476)
chr8 (21-85)||(2621097-2621161)
chr8 (13-72)||(20216128-20216187)
chr8 (13-72)||(20235726-20235785)
chr8 (29-80)||(39221691-39221742)
chr8 (13-79)||(24789426-24789492)
chr8 (29-70)||(38546859-38546900)
chr8 (18-58)||(24891551-24891591)
[»] chr7 (27 HSPs)
chr7 (21-80)||(28067407-28067466)
chr7 (17-80)||(1876175-1876238)
chr7 (29-80)||(48558828-48558879)
chr7 (21-80)||(26299072-26299131)
chr7 (19-72)||(5924192-5924245)
chr7 (33-82)||(16560791-16560840)
chr7 (33-82)||(16604822-16604871)
chr7 (13-90)||(33978734-33978811)
chr7 (12-80)||(5023317-5023385)
chr7 (89-136)||(11205731-11205778)
chr7 (13-72)||(17172347-17172406)
chr7 (13-80)||(19804957-19805024)
chr7 (25-80)||(36072542-36072597)
chr7 (20-80)||(9223561-9223621)
chr7 (29-72)||(2959874-2959917)
chr7 (21-80)||(9355298-9355357)
chr7 (13-80)||(16567486-16567553)
chr7 (13-80)||(16598109-16598176)
chr7 (29-72)||(40789675-40789718)
chr7 (13-72)||(44300640-44300699)
chr7 (13-80)||(46181132-46181199)
chr7 (21-79)||(35092849-35092907)
chr7 (13-51)||(39414526-39414564)
chr7 (18-80)||(40342449-40342511)
chr7 (19-72)||(3551667-3551720)
chr7 (23-80)||(43224243-43224300)
chr7 (19-72)||(46783015-46783068)
[»] chr3 (28 HSPs)
chr3 (18-90)||(38694951-38695023)
chr3 (19-72)||(30248192-30248245)
chr3 (13-72)||(45079338-45079397)
chr3 (31-85)||(19872996-19873050)
chr3 (20-80)||(5908139-5908199)
chr3 (13-80)||(27064100-27064167)
chr3 (13-80)||(49374701-49374768)
chr3 (13-80)||(50481196-50481263)
chr3 (27-77)||(39961414-39961464)
chr3 (22-72)||(40563855-40563905)
chr3 (13-85)||(13735759-13735832)
chr3 (12-79)||(39352375-39352443)
chr3 (21-80)||(5041194-5041253)
chr3 (29-80)||(8340061-8340112)
chr3 (29-72)||(10085409-10085452)
chr3 (29-72)||(10192329-10192372)
chr3 (17-72)||(19454701-19454756)
chr3 (13-80)||(24987539-24987606)
chr3 (29-72)||(33118619-33118662)
chr3 (29-68)||(41410406-41410445)
chr3 (13-80)||(44792775-44792842)
chr3 (18-80)||(19618593-19618655)
chr3 (13-79)||(23299653-23299719)
chr3 (13-79)||(48583639-48583705)
chr3 (21-70)||(43657186-43657235)
chr3 (19-80)||(48079982-48080043)
chr3 (28-80)||(35688210-35688262)
chr3 (29-69)||(42096891-42096931)
[»] scaffold0160 (1 HSPs)
scaffold0160 (22-72)||(26263-26313)
[»] scaffold0242 (2 HSPs)
scaffold0242 (13-80)||(13200-13267)
scaffold0242 (13-80)||(22035-22102)
[»] chr6 (9 HSPs)
chr6 (18-80)||(6799554-6799616)
chr6 (18-72)||(9062274-9062328)
chr6 (12-80)||(1329684-1329752)
chr6 (13-72)||(1221837-1221896)
chr6 (19-78)||(6937978-6938037)
chr6 (13-72)||(24447248-24447307)
chr6 (18-80)||(6337153-6337215)
chr6 (13-79)||(6338059-6338125)
chr6 (13-54)||(33331546-33331587)
[»] scaffold0005 (1 HSPs)
scaffold0005 (13-80)||(240594-240661)
[»] scaffold0024 (1 HSPs)
scaffold0024 (22-70)||(110142-110190)


Alignment Details
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 15674106 - 15674173
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  15674106 gggcccgggtacgggtattttttacaaacgcgggtatggggatgggtactatagtaccctgcccattg 15674173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 33347203 - 33347270
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||  ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  33347203 gggcccgggtacgaatattttttacaaacgcggatatggggatgggtactatagtaccctgcccattg 33347270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 41709437 - 41709389
Alignment:
Q  89 aactaggggagtcaccacatttatattccttgttctagatatcctatca 137  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||    
T  41709437 aactagaggagtcaccacatttatattccttattctagatatcctatca 41709389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 14088249 - 14088182
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||| ||| ||||||||| |||||||    
T  14088249 gggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattg 14088182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 32302375 - 32302316
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||| |||||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  32302375 gtacgggcattttttacaaacgcgggtatggggatggatactatagtaccctacccattg 32302316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 19254621 - 19254674
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    ||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||    
T  19254621 gggtacgggcattttttacaaatgagggtatggggatggatactatagtaccct 19254674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 35935281 - 35935225
Alignment:
Q  24 cgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||||||||| | |||||||  |||||||| |||||||||||||||||||    
T  35935281 cgggtattttttacaaacgtgggtatgaggatgggtagtatagtaccctgcccattg 35935225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 6277958 - 6278001
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  6277958 attttttacaaatgagggtatggggatgggtactatagtaccct 6278001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 16186740 - 16186681
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||||||||| |||| ||||||||||  |||||| ||||||| |||||||    
T  16186740 gtacgggtattttttacaaacgcggatatggagatgaatactattgtacccttcccattg 16186681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 30774769 - 30774714
Alignment:
Q  30 ttttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    ||||||||||| |||| ||||| ||||| |||||||||||||| ||||||||||||    
T  30774769 ttttttacaaacgcggatatggggatggatactatagtaccctacccattgccatc 30774714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 29455766 - 29455704
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||| |||||| |||||||||||||| |||||  | ||||||||||| |||||||    
T  29455766 cgggtacgggtaatttttaaaaatgcgggtatggggatggacattatagtaccctacccattg 29455704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 38309738 - 38309696
Alignment:
Q  30 ttttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  38309738 ttttttataaatgagggtatggagatgggtactatagtaccct 38309696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 41692600 - 41692654
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||  |||||||||||||| |||||||| ||||| ||||||||||||||    
T  41692600 cgggtacggacattttttacaaatgagggtatggggatggatactatagtaccct 41692654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 15023458 - 15023514
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    |||||||||||| || ||||||| || ||| | ||||||||||||||||||||||||    
T  15023458 attttttacaaacgccggtatggggacgggcattatagtaccctgcccattgccatc 15023514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 3049899 - 3049954
Alignment:
Q  30 ttttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    ||||||||||| | ||||||||| ||||||||||||||||| |  |||||||||||    
T  3049899 ttttttacaaacgtgggtatggaaatgggtactatagtaccatatccattgccatc 3049954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 4902084 - 4902127
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||| |||||||||| |||| |||||||||||||||    
T  4902084 attttttacaaacgcgggtatggggatgagtactatagtaccct 4902127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 6092807 - 6092748
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||| |||||||||||| |||||||| | || ||| | |||||||||||||||||||    
T  6092807 gtacgggcattttttacaaacgcgggtatcgggacgggcattatagtaccctgcccattg 6092748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 10937401 - 10937342
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||| ||||||||||||  ||||||||| || |||||||| ||||||||    
T  10937401 gggctcgggtacgggcattttttacaaacacgggtatggggaagggtactacagtaccct 10937342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 14087644 - 14087577
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||| || |||||| |||||||||||||| |||||| | | ||||||||| |||||||    
T  14087644 gggcacgggtacggataatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattg 14087577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 14645295 - 14645229
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  14645295 gggcacgggtacgggtattttttataaatgcgggtatgg-gacgggcattgtagtaccctacccattg 14645229  T

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Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 15719309 - 15719376
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||| ||||| || ||| | | ||||||||| |||||||    
T  15719309 gggcacgggtacgggtattttttataaatgcggttatggggacgggcattgtagtaccctacccattg 15719376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 34718927 - 34718970
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||    
T  34718927 attttttacaaatgagggtatggggatggatactatagtaccct 34718970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 6224960 - 6225026
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccatt 79  Q
    |||| |||||||| ||| |||||| |||||||||||||| |||||| | | ||||||||| ||||||    
T  6224960 gggcacgggtacgagtaatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccatt 6225026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 18480354 - 18480391
Alignment:
Q  43 cgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  18480354 cgggtatggggatgggtactatagtaccctacccattg 18480391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 41935656 - 41935720
Alignment:
Q  16 cccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41935656 cccgggtacagatattttttacaaacgcgggtatggagatgggtactatagtaccctgcccattg 41935720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 29546228 - 29546283
Alignment:
Q  17 ccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  29546228 ccgggtacgggtattttttacaaacgtgggtatggggatgggtactatagtaccct 29546283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 18974685 - 18974633
Alignment:
Q  20 ggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  18974685 ggtacgggtattttttgcaaacgcgggtatggggatgggtactatagtaccct 18974633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 3329161 - 3329100
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||||||| |||||||||||||| || ||| ||| ||||||||| |||||||    
T  3329161 gggtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattg 3329100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 20937018 - 20936958
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccat 78  Q
    |||||||||||||||||||||||| ||||||||  |||||| ||| ||||||||| |||||    
T  20937018 cgggtacgggtattttttacaaatacgggtatgaggatgggcactgtagtaccctacccat 20936958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 2656758 - 2656711
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgccc 76  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||    
T  2656758 attttttacaaacgtgggtatagagatgggtactatagtaccctgccc 2656711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 35048599 - 35048540
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||| | |||||||||||| |||||||||| ||||| ||||||||||||||    
T  35048599 gggcacgggtacgagcattttttacaaacgcgggtatggggatggatactatagtaccct 35048540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 38620368 - 38620301
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||| ||||||| |||||| | | ||||||||| |||||||    
T  38620368 gggcacgggtacgggtattttttataaatgcaggtatggggatgggcattgtagtaccctacccattg 38620301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 29221323 - 29221385
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||| |||||||||||||||||||||||  | ||| | |||||||||||| ||||||    
T  29221323 cgggtacgggcattttttacaaatgcgggtatgggaacgggcattatagtaccctgtccattg 29221385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 29334622 - 29334684
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||| |||||||||||||||||||||||  | ||| | |||||||||||| ||||||    
T  29334622 cgggtacgggcattttttacaaatgcgggtatgggaacgggcattatagtaccctgtccattg 29334684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 8027580 - 8027653
Alignment:
Q  13 gggcccgggtacgggtattttttacaaat-gcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    |||| |||||||||  ||||||||||||  |||||||||| ||||| ||||||||||| || ||||||||||||    
T  8027580 gggcacgggtacggacattttttacaaaacgcgggtatggggatggatactatagtacactacccattgccatc 8027653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 25667436 - 25667376
Alignment:
Q  20 ggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||| ||||||||||||| ||||||| || || ||||| ||||||||||| |||||||    
T  25667436 ggtacggatattttttacaaacgcgggtacggggaagggtattatagtaccctacccattg 25667376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 4289616 - 4289557
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |||||||| ||| | ||||||||||||||    
T  4289616 gggctcgggtacggacattttttacaaatgagggtatggggatagatactatagtaccct 4289557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 15234286 - 15234219
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| |||||||||  |||||||||||| ||| ||||||   |||||||||||||||||| |||||||    
T  15234286 gggctcgggtacggacattttttacaaacgcgagtatgggattgggtactatagtaccctacccattg 15234219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 31440764 - 31440831
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||| | || ||| | | ||||||||| |||||||    
T  31440764 gggcacgggtacgggtattttttataaatgcgggtattgggacgggcattgtagtaccctacccattg 31440831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 40475392 - 40475435
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||| |||||||||| || |||||||||||||||||    
T  40475392 attttttacaaacgcgggtatggggaagggtactatagtaccct 40475435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 40507739 - 40507782
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||| |||||||||| || |||||||||||||||||    
T  40507739 attttttacaaacgcgggtatggggaagggtactatagtaccct 40507782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 4481033 - 4480971
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||||||||||| |||||||||||||| || ||| | | ||||||| | |||||||    
T  4481033 cgggtacgggtattttttataaatgcgggtatggggacgggcattgtagtaccttacccattg 4480971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 12345642 - 12345688
Alignment:
Q  33 tttacaaatgcgggtatggagatgggtactatagtaccctgcccatt 79  Q
    |||||||| | |||||||||||||| |||||||||||||| ||||||    
T  12345642 tttacaaacgtgggtatggagatggatactatagtaccctacccatt 12345688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 44070533 - 44070601
Alignment:
Q  13 gggcccgggtacgggta-ttttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| |||||||||||| ||||||| |||||||| |||| ||| ||| ||| ||||||||| |||||||    
T  44070533 gggcacgggtacgggtatttttttataaatgcggatatgaagacgggcactgtagtaccctacccattg 44070601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 11034681 - 11034618
Alignment:
Q  17 ccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||    
T  11034681 ccgggtacgggtattttttacaaacgcaggtatggggatgggtactatagtaccctgcccattg 11034618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 22829733 - 22829672
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  22829733 gggtacgggtattttttacaaacgcgggtatggggatgggtactatagtaccctacccattg 22829672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 52013791 - 52013720
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatctctaa 90  Q
    |||||| || |||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||| ||||    
T  52013791 gggtacaggcattttttacaaacgcggatatggggatgggtactatagtaccctacccattgccatccctaa 52013720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 1758101 - 1758168
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| |||||| ||| |||| ||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  1758101 gggcacgggtatgggcatttcttacaaatgtgggtatggagatgggcactatagtaccctacccattg 1758168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 12185768 - 12185701
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||| ||| ||||||||| |||||||    
T  12185768 gggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattg 12185701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 12187760 - 12187693
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||| ||| ||||||||| |||||||    
T  12187760 gggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattg 12187693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 28234293 - 28234352
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  ||||||||||||||||||||||| ||||| ||||||||||||||    
T  28234293 gggcacgggtacggacattttttacaaatgcgggtatggggatggatactatagtaccct 28234352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 39804244 - 39804193
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  39804244 attttttacaaatgcgggtatggggatggatactatagtaccctacccattg 39804193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 7262013 - 7261955
Alignment:
Q  12 agggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtacc 70  Q
    |||||||| |||||||||||||||||||| |||| ||| | ||||||||||||||||||    
T  7262013 agggcccgagtacgggtattttttacaaacgcggatatagggatgggtactatagtacc 7261955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 29405999 - 29406053
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||| | |||||||||||||| |||||||| ||||||||||||||||||||    
T  29405999 cgggtacgagcattttttacaaatgagggtatggggatgggtactatagtaccct 29406053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 22247855 - 22247802
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    ||||||| | |||||||||||||| |||||||| ||||||||||||||||||||    
T  22247855 gggtacgtgcattttttacaaatgagggtatggggatgggtactatagtaccct 22247802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 46080700 - 46080648
Alignment:
Q  20 ggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||| |||||||||||||| |||||||| ||| ||||||||||||||||    
T  46080700 ggtacgggcattttttacaaatgagggtatggggattggtactatagtaccct 46080648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 3387337 - 3387404
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  3387337 gggcacgggtacgggtattttttataaatgcgggtatggggacgggcattgtagtaccctacccattg 3387404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 14576781 - 14576714
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||| ||| || |||||| |||||||    
T  14576781 gggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtaataccctacccattg 14576714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 26340384 - 26340435
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  26340384 attttttacaaacgcgggtatggggatggatactatagtaccctacccattg 26340435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 45097535 - 45097492
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  45097535 attttttacaaatgagggtatggggatgggtactatagtaccct 45097492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 50982075 - 50982138
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgcc 82  Q
    |||||||||||||||||||||| | | |||||| || |||||||||| |||||| |||||||||    
T  50982075 gggtacgggtattttttacaaacgtgagtatggggaagggtactataataccctacccattgcc 50982138  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 53140600 - 53140541
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |||||||| ||||| ||||||||||||||    
T  53140600 gggctcgggtacggacattttttacaaatgagggtatggggatggatactatagtaccct 53140541  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 22306933 - 22307003
Alignment:
Q  22 tacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatctctaact 92  Q
    ||||| ||||||||||||| |||||||||   ||| ||||||||||||||| | |||||||||| ||||||    
T  22306933 tacggatattttttacaaacgcgggtatgagaatgagtactatagtaccctacacattgccatccctaact 22307003  T

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Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 31786404 - 31786342
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||| ||||||||||||||||| |||||||||  ||||  |||||||||||||| |||||||    
T  31786404 cgggtccgggtattttttacaaacgcgggtatgaggatgaatactatagtaccctacccattg 31786342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 52802404 - 52802454
Alignment:
Q  30 ttttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||| ||||||    
T  52802404 ttttttacaaatgagggtatggggatggatactatagtaccctgtccattg 52802454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 38000582 - 38000514
Alignment:
Q  18 cgggtacgggtatttttt-acaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    |||||||| ||||||||| | ||||||||||||||||| ||  ||| ||||||||| ||||||||||||    
T  38000582 cgggtacgagtatttttttataaatgcgggtatggagacggacactgtagtaccctacccattgccatc 38000514  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 39485272 - 39485328
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    |||||||||||| |||||||||| ||   ||||||||||||||| ||||||||||||    
T  39485272 attttttacaaacgcgggtatggggaaatgtactatagtaccctacccattgccatc 39485328  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 2721370 - 2721413
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||| |||||||||||||||| |||| |||||||||    
T  2721370 attttttacaaacgcgggtatggagatggatactgtagtaccct 2721413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 21297390 - 21297449
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| |||||||||| ||||  || |||||| |||||||||||||||| ||||||    
T  21297390 gtacgggtagtttttacaaacgcggaaatagagatgagtactatagtaccctgtccattg 21297449  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 42053389 - 42053456
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||| ||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  42053389 gggcacgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattg 42053456  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 42755330 - 42755263
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| ||||| |||||||| || ||| | | ||||||||| |||||||    
T  42755330 gggcacgggtacgggtattttttataaatgagggtatggggacgggcagtgtagtaccctacccattg 42755263  T

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Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 652234 - 652196
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatgg 51  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  652234 gggcacgggtacgggtattttttataaatgcgggtatgg 652196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 24486543 - 24486493
Alignment:
Q  30 ttttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||| ||| |||||| || ||||||||||||||||| |||||||    
T  24486543 ttttttacaaacgcgagtatggggaagggtactatagtaccctacccattg 24486493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 23147403 - 23147326
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatctctaa 90  Q
    |||| ||||||||| ||||||||| |||||||||||||| || ||| | | ||||| | | |||||||||||| ||||    
T  23147403 gggcacgggtacggatattttttataaatgcgggtatggggacgggcattgtagtatcttacccattgccatccctaa 23147326  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 46258110 - 46258163
Alignment:
Q  27 gtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||| ||||||||| |||||||  |||||| ||||||||||||| |||||||    
T  46258110 gtatttcttacaaatgtgggtatgaggatgggcactatagtaccctacccattg 46258163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 22313476 - 22313548
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    |||| ||||||| |||| |||||  |||||||| ||||| |||||| | | ||||||||| ||||||||||||    
T  22313476 gggcacgggtacaggtaattttttaaaatgcggatatggggatgggcattgtagtaccctacccattgccatc 22313548  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 31646431 - 31646486
Alignment:
Q  17 ccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31646431 ccgggtacgggtattttttacaaacgcgggtatggagatgggtactatagtaccct 31646486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 48796516 - 48796449
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||| ||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  48796516 gggcccggatacgggtattttttacaaacgcgggtatgggaatgggtactatagtaccctgcccattg 48796449  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 29426436 - 29426496
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  29426436 gggtacgggtattttttacaaacgcggatatgg-gatgggtactatagtaccctgcccattg 29426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 48985115 - 48985054
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||||    
T  48985115 gggtacggatattttttacgaacgcgggtatggagatgggtaccatagtaccctgcccattg 48985054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 48662632 - 48662570
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| ||||||||||||| || |||||||| ||||||||||||||||||| |||||||    
T  48662632 cgggtacggatattttttacaaacgcaggtatggaaatgggtactatagtaccctacccattg 48662570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 42069246 - 42069313
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||| ||| ||||||||| |||||||    
T  42069246 gggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattg 42069313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 32133472 - 32133411
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| |||||| |||||| ||||||||| ||||| |||||||||||||| |||||||    
T  32133472 gggtacgggcatttttcacaaatacgggtatggggatggttactatagtaccctacccattg 32133411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 4893421 - 4893480
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |||||||| ||||| ||||||||||||||    
T  4893421 gggctcgggtacggacattttttacaaatgagggtatggggatggatactatagtaccct 4893480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 8981695 - 8981754
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||| ||||||||||||| ||||||||||  |||| |||||||||||||| |||||||    
T  8981695 gtacggatattttttacaaacgcgggtatgggaatggatactatagtaccctacccattg 8981754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 20414947 - 20414888
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| ||| |||||| |||||||||||||| |||||||| |||||||| |||||||||||    
T  20414947 gggctcggatacgggcattttttacaaatgagggtatggggatgggtattatagtaccct 20414888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 23405722 - 23405769
Alignment:
Q  89 aactaggggagtcaccacatttatattccttgttctagatatcctatc 136  Q
    |||||||||||||| || ||||||||||||| ||||||||||||||||    
T  23405722 aactaggggagtcatcatatttatattccttattctagatatcctatc 23405769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 29185066 - 29185007
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |||||||| ||||| ||||||||||||||    
T  29185066 gggctcgggtacggacattttttacaaatgagggtatggggatggatactatagtaccct 29185007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 2978393 - 2978331
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||| |||||| |||||||||||||| |||||| | | ||||||||| |||||||    
T  2978393 cgggtacgggtaatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattg 2978331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 14106294 - 14106232
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||  |||||||||||| | |||||| | ||||| ||||||||||||||||||||||    
T  14106294 cgggtacggacattttttacaaacgtgggtatagggatggatactatagtaccctgcccattg 14106232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 35978642 - 35978704
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||||||||||| ||||| |||||||| || ||| ||| ||||||||| |||||||    
T  35978642 cgggtacgggtattttttataaatgtgggtatggggacgggcactgtagtaccctacccattg 35978704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 39026715 - 39026661
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||| |||||||||||| | |||||||| ||||| ||||||||||||||    
T  39026715 cgggtacgggcattttttacaaacgtgggtatggcgatggatactatagtaccct 39026661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 945451 - 945387
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    ||||||||| |||||| |||| ||||||||| |||||| | | ||||||||| ||||||||||||    
T  945451 gtacgggtaatttttaaaaatacgggtatggggatgggcattgtagtaccctacccattgccatc 945387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 12560704 - 12560756
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtacc 70  Q
    ||||||||||||||||||| |||||||||||| | || ||| |||||||||||    
T  12560704 cgggtacgggtattttttataaatgcgggtatagggacgggcactatagtacc 12560756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 40094653 - 40094705
Alignment:
Q  28 tattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||||| |||||||||| ||||| |||||| ||||||| |||||||    
T  40094653 tattttttacaaacgcgggtatggggatggatactatggtaccctacccattg 40094705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 13312712 - 13312645
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||| ||||||||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  13312712 gggcacggatacgggtattttttataaatgcgggtatggggacgggcattgtagtaccctacccattg 13312645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 25815455 - 25815522
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||| ||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  25815455 gggcacgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattg 25815522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 28220947 - 28220880
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||| |||||||| |||||| |||||||||||||| |||||| | | ||||||||| |||||||    
T  28220947 gggcacggatacgggtaatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattg 28220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 30489629 - 30489578
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||| |||||||||| || | ||||||||||||||| |||||||    
T  30489629 attttttacaaacgcgggtatggggaagagtactatagtaccctacccattg 30489578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 33363040 - 33363083
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||    
T  33363040 attttttacaaatgagggtatggggatggatactatagtaccct 33363083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 34320912 - 34320861
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||| |||||||||| || |||||||||||||| || |||||||    
T  34320912 attttttacaaacgcgggtatggggaagggtactatagtactctacccattg 34320861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 35739140 - 35739207
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| |||||| ||| |||||||||||| |||||||||  ||||| ||||||| |||||| |||||||    
T  35739140 gggcacgggtatgggcattttttacaaacgcgggtatgtggatggatactataataccctacccattg 35739207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 4052494 - 4052560
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccatt 79  Q
    |||| |||||||||  |||||||||||| |||||||||| || || |||||| ||||||| ||||||    
T  4052494 gggctcgggtacggacattttttacaaacgcgggtatggggaaggatactattgtaccctacccatt 4052560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 48514406 - 48514352
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||| | |||||||||||| ||||||||||  |||| ||||||||||||||    
T  48514406 cgggtacgagcattttttacaaacgcgggtatgggaatggatactatagtaccct 48514352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 9472920 - 9472855
Alignment:
Q  20 ggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    |||||||  |||||||||| |||||||||||| ||  |||| |||| |||||| ||||||||||||    
T  9472920 ggtacggacattttttacatatgcgggtatggggaaaggtattataataccctacccattgccatc 9472855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 48964512 - 48964569
Alignment:
Q  23 acgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||| |||||||||||||| ||  || ||| ||||||||| |||||||    
T  48964512 acgggtattttttataaatgcgggtatggggacaggcactgtagtaccctacccattg 48964569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 2501547 - 2501487
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccat 78  Q
    |||||||| |||||||||||||| ||| |||||| || ||| ||| ||||||||| |||||    
T  2501547 cgggtacgagtattttttacaaacgcgtgtatggggaagggcactgtagtaccctacccat 2501487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 19996811 - 19996871
Alignment:
Q  20 ggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||| ||| ||||||||||||||| ||||| |||||| | | ||||||||| |||||||    
T  19996811 ggtacgagtaatttttacaaatgcggatatggggatgggcattgtagtaccctacccattg 19996871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 47662254 - 47662198
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtac 69  Q
    |||| |||||||| | |||||||||||| | |||||||| ||||| |||||||||||    
T  47662254 gggcacgggtacgagcattttttacaaacgtgggtatggggatggatactatagtac 47662198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 50099787 - 50099747
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatggg 58  Q
    |||||||||| |||||||||||| |||||||||| ||||||    
T  50099787 cgggtacgggcattttttacaaacgcgggtatggggatggg 50099747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 38020020 - 38019961
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  38020020 gtacgagtattttttacaaacgcgggtatggggatgggtactatagtaccctgcccattg 38019961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 44761871 - 44761822
Alignment:
Q  89 aactaggggagtcaccacatttatattccttgttctagatatcctatcac 138  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44761871 aactaggggagtcaccacatttatattccttattctagatatcctatcac 44761822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 44765177 - 44765129
Alignment:
Q  89 aactaggggagtcaccacatttatattccttgttctagatatcctatca 137  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44765177 aactaggggagtcaccacatttatattccttattctagatatcctatca 44765129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 37226906 - 37226968
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||| ||||||||||||||||||||||| || ||||||| ||||||||| |||||||    
T  37226906 cgggtacgggcattttttacaaatgcgggtatggggaagggtactgtagtaccctacccattg 37226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 3616993 - 3617060
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| |||||||| |||||||||| |||||||||||||| || ||| ||||||||||||| |||||||    
T  3616993 gggcacgggtacgagtattttttataaatgcgggtatggggacgggcactatagtaccctacccattg 3617060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 7580037 - 7579970
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| |||||||||  ||||||||||||  ||||||||| |||||||||||||||||||| |||||||    
T  7580037 gggcacgggtacggccattttttacaaacacgggtatggggatgggtactatagtaccctacccattg 7579970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 19643642 - 19643709
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| |||||||||||| ||||||||||||| |||||||||||| | | ||||||||||| |||||||    
T  19643642 gggcacgggtacgggtaatttttacaaatgcaggtatggagatgagcattatagtaccctacccattg 19643709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 221958 - 221895
Alignment:
Q  18 cgggtacgggtatttttt-acaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||||    
T  221958 cgggtacggatatttttttacaaacgcgggtatggagatggatactataataccctacccattg 221895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 691113 - 691050
Alignment:
Q  18 cgggtacgggtatttttt-acaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||||    
T  691113 cgggtacggatatttttttacaaacgcgggtatggagatggatactataataccctacccattg 691050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 735581 - 735518
Alignment:
Q  18 cgggtacgggtatttttt-acaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||||    
T  735581 cgggtacggatatttttttacaaacgcgggtatggagatggatactataataccctacccattg 735518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 859477 - 859414
Alignment:
Q  18 cgggtacgggtatttttt-acaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||||    
T  859477 cgggtacggatatttttttacaaacgcgggtatggagatggatactataataccctacccattg 859414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 34776863 - 34776925
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||| |||||||||||| |||||||| | || ||| | |||||||||||||||||||    
T  34776863 cgggtacgggcattttttacaaacgcgggtatcgggacgggcattatagtaccctgcccattg 34776925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 2472427 - 2472476
Alignment:
Q  31 tttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||||||||||||||||| | | ||||||||| |||||||    
T  2472427 tttttacaaatgcgggtatggagatgggcattgtagtaccctacccattg 2472476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 2621097 - 2621161
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    ||||||||| |||||| ||||||||||||||  ||||| | | ||||||||| ||||||||||||    
T  2621097 gtacgggtaatttttaaaaatgcgggtatgggaatgggcattgtagtaccctacccattgccatc 2621161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 20216187 - 20216128
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |  ||||| ||||||||||||||||||||    
T  20216187 gggctcgggtacggacattttttacaaatgagcttatggggatgggtactatagtaccct 20216128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 20235785 - 20235726
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |  ||||| ||||||||||||||||||||    
T  20235785 gggctcgggtacggacattttttacaaatgagcttatggggatgggtactatagtaccct 20235726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 39221691 - 39221742
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||||  ||||||||| ||||||||| ||||||||||||| ||||    
T  39221691 attttttacaaacacgggtatggggatgggtacgatagtaccctgcctattg 39221742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 24789492 - 24789426
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccatt 79  Q
    |||| ||||||||||||||||||| |||||||||||||  || ||| | | ||||||||| ||||||    
T  24789492 gggcacgggtacgggtattttttataaatgcgggtatgaggacgggcattgtagtaccctacccatt 24789426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 38546900 - 38546859
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtacc 70  Q
    |||||||||||| |||| ||||||||||| ||||||||||||    
T  38546900 attttttacaaacgcggttatggagatggatactatagtacc 38546859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 24891551 - 24891591
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatggg 58  Q
    |||||||| ||| ||||||||||||||||||||| ||||||    
T  24891551 cgggtacgagtaatttttacaaatgcgggtatggggatggg 24891591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 28067407 - 28067466
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||    
T  28067407 gtacgggtattttttacaaacgcgggtatggggatgggtactattgtaccctgcccattg 28067466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 1876175 - 1876238
Alignment:
Q  17 ccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||| |||||||    
T  1876175 ccgggtacgagtattttttacaaacgcgggtatggggatgggtaccatagtacccttcccattg 1876238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 48558828 - 48558879
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  48558828 attttttacaaatgcgggtatggggatgggtactatagtaccgtgcccattg 48558879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 26299131 - 26299072
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||    
T  26299131 gtacgggcattttttacaaacgcgagtatggagatggatactatagtaccctacccattg 26299072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 5924192 - 5924245
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||    
T  5924192 gggtacgggtattttttacaaacgcggatatggggatgggtactataataccct 5924245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 16560840 - 16560791
Alignment:
Q  33 tttacaaatgcgggtatggagatgggtactatagtaccctgcccattgcc 82  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  16560840 tttacaaatgcgggtatggagatggatgctatagtaccctacccattgcc 16560791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 16604822 - 16604871
Alignment:
Q  33 tttacaaatgcgggtatggagatgggtactatagtaccctgcccattgcc 82  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  16604822 tttacaaatgcgggtatggagatggatgctatagtaccctacccattgcc 16604871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 33978811 - 33978734
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatctctaa 90  Q
    |||| |||||||||  ||||||| |||| ||||||||||| || | |||||||||||||| |||||||||||| ||||    
T  33978811 gggcacgggtacggacattttttgcaaacgcgggtatggaaatcgatactatagtaccctacccattgccatccctaa 33978734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 5023317 - 5023385
Alignment:
Q  12 agggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||| || |||||||||||||||| |||||||||||||| || ||| ||| ||||||||| |||||||    
T  5023317 agggcacgagtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattg 5023385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 11205778 - 11205731
Alignment:
Q  89 aactaggggagtcaccacatttatattccttgttctagatatcctatc 136  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  11205778 aactaggagagtcaccacatttatattccatattctagatatcctatc 11205731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 17172347 - 17172406
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |||||||| ||||| ||||||||||||||    
T  17172347 gggctcgggtacggacattttttacaaatgagggtatggggatggatactatagtaccct 17172406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 19805024 - 19804957
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||||  || ||| ||| ||||||||| |||||||    
T  19805024 gggcacgggtacgggtattttttataaatgcgggtatgaggacgggcactgtagtaccctacccattg 19804957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 36072597 - 36072542
Alignment:
Q  25 gggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||||||| |||||||||| ||||| |||||||||| |||||| ||||    
T  36072597 gggtattttttacaaacgcgggtatggggatggatactatagtatcctgcctattg 36072542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 9223621 - 9223561
Alignment:
Q  20 ggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||| |||||||||||| | |||||||| ||||| ||| |||||||||| |||||||    
T  9223621 ggtacgggcattttttacaaacgtgggtatggggatggatacaatagtaccctacccattg 9223561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 2959917 - 2959874
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    ||||||||||||| ||||||| | ||||||||||||||||||||    
T  2959917 attttttacaaatacgggtatagggatgggtactatagtaccct 2959874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 9355298 - 9355357
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||| |||||||||||||| | |||||||  ||||| |||||||||||||| |||||||    
T  9355298 gtacgagtattttttacaaacgtgggtatgaggatggatactatagtaccctacccattg 9355357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 16567553 - 16567486
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||| ||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  16567553 gggcacgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattg 16567486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 16598109 - 16598176
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||| ||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  16598109 gggcacgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattg 16598176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 40789675 - 40789718
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||    
T  40789675 attttttacaaatgagggtatggggatgggtactataataccct 40789718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 44300699 - 44300640
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |  ||||| ||||||||||||||||||||    
T  44300699 gggctcgggtacggacattttttacaaatgagcttatggggatgggtactatagtaccct 44300640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 46181199 - 46181132
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||| ||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  46181199 gggcacgggtacggatattttttataaatgcgggtatggggacgggcattgtagtaccctacccattg 46181132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 35092849 - 35092907
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccatt 79  Q
    ||||| |||||||||| |||||||||||||| || ||| ||| ||||||||| ||||||    
T  35092849 gtacgagtattttttataaatgcgggtatggggacgggcactgtagtaccctacccatt 35092907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 39414564 - 39414526
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatgg 51  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  39414564 gggcacgggtacgggtattttttataaatgcgggtatgg 39414526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 40342449 - 40342511
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||| || |||||||||||||| ||| |||||   ||||||||||||||||||| |||||||    
T  40342449 cgggtccgagtattttttacaaacgcgtgtatgagaatgggtactatagtaccctacccattg 40342511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 3551667 - 3551720
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||| |||||||||||||||| ||||||||  || ||||||| |||||||||    
T  3551667 gggtacaggtattttttacaaatacgggtatgaggaagggtactgtagtaccct 3551720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 43224300 - 43224243
Alignment:
Q  23 acgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||| |||||| |||||||||||||| |||||| | | ||||||||| |||||||    
T  43224300 acgggtaatttttaaaaatgcgggtatggggatgggcattgtagtacccttcccattg 43224243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 46783068 - 46783015
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    ||||||| |||||||||| |||||||||||||| || ||| ||| |||||||||    
T  46783068 gggtacgtgtattttttataaatgcgggtatggggacgggcactgtagtaccct 46783015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 38694951 - 38695023
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatctctaa 90  Q
    ||||||| || |||||| |||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||    
T  38694951 cgggtacaggcatttttcacaaatgcggatatggggatgggtactatagtaccctacccattgccatccctaa 38695023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 30248192 - 30248245
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||||||||    
T  30248192 gggtacgggcattttttacaaatgagggtatggggatgggtactatagtaccct 30248245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 45079338 - 45079397
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |||||||| ||||||||||||||||||||    
T  45079338 gggctcgggtacggacattttttacaaatgagggtatggggatgggtactatagtaccct 45079397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 19873050 - 19872996
Alignment:
Q  31 tttttacaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    |||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||    
T  19873050 tttttacaaatgcgggtatgaagatgggcattatagtaccctacccattgccatc 19872996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 5908199 - 5908139
Alignment:
Q  20 ggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||| |||||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  5908199 ggtatgggcattttttacaaacgcgggtatggggatggatactatagtaccctacccattg 5908139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 27064167 - 27064100
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| |||| ||||| |||||||||||| |||||||||| || ||||||||| ||||||| |||||||    
T  27064167 gggctcgggcacgggcattttttacaaacgcgggtatggggaagggtactattgtaccctacccattg 27064100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 49374768 - 49374701
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||| |||||||||||||||||||  ||||||||| ||||| |||||||||| ||| |||||||    
T  49374768 gggcacggatacgggtattttttacaaacacgggtatggggatggatactatagtatcctacccattg 49374701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 50481196 - 50481263
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| ||||||||| |||| || ||| ||| ||||||||| |||||||    
T  50481196 gggcacgggtacgggtattttttataaatgcggggatggggacgggcactgtagtaccctacccattg 50481263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 39961464 - 39961414
Alignment:
Q  27 gtattttttacaaatgcgggtatggagatgggtactatagtaccctgccca 77  Q
    |||||||||| ||| |||||||||| |||||| ||||||||||||||||||    
T  39961464 gtattttttataaacgcgggtatggggatgggcactatagtaccctgccca 39961414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 40563905 - 40563855
Alignment:
Q  22 tacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||| ||||||||||||||||||||| |||||||| | |||||||||    
T  40563905 tacgggtaatttttacaaatgcgggtatggggatgggtattgtagtaccct 40563855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 13735759 - 13735832
Alignment:
Q  13 gggcccgggtacgggtatttttt-acaaatgcgggtatggagatgggtactatagtaccctgcccattgccatc 85  Q
    |||| |||||| ||||||||||| | |||||||||||||| || ||| ||| ||||||||| ||||||||||||    
T  13735759 gggcacgggtaagggtatttttttataaatgcgggtatggggacgggcactgtagtaccctacccattgccatc 13735832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 39352443 - 39352375
Alignment:
Q  12 agggcccgggtacgggtatttttt-acaaatgcgggtatggagatgggtactatagtaccctgcccatt 79  Q
    ||||| |||||||||||||||||| | |||||||||||||| || ||| ||| ||||||||| ||||||    
T  39352443 agggcacgggtacgggtatttttttataaatgcgggtatggggacgggcactgtagtaccctacccatt 39352375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 5041194 - 5041253
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| |||||| |||||||||||||| |||||| | | ||||||||| |||||||    
T  5041194 gtacgggtaatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattg 5041253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 8340112 - 8340061
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||||| |||||||||| ||||| ||||| ||||||||||| ||||    
T  8340112 attttttacaaacgcgggtatggggatggatactagagtaccctgcctattg 8340061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 10085409 - 10085452
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||| |||||||||||||||| |||| |||||||||    
T  10085409 attttttacaaacgcgggtatggagatggatactgtagtaccct 10085452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 10192329 - 10192372
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||| |||||||||||||||| |||| |||||||||    
T  10192329 attttttacaaacgcgggtatggagatggatactgtagtaccct 10192372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 19454756 - 19454701
Alignment:
Q  17 ccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    ||||||||| | |||||||||||| || || |||| ||||||||||||||||||||    
T  19454756 ccgggtacgagcattttttacaaacgcaggcatggggatgggtactatagtaccct 19454701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 24987539 - 24987606
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| |||| |||||||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  24987539 gggcacgggcacgggtattttttataaatgcgggtatggggacgggcattgtagtaccctacccattg 24987606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 33118662 - 33118619
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||    
T  33118662 attttttacaaacgcgggtatggagaagggtaatatagtaccct 33118619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 41410406 - 41410445
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagta 68  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  41410406 attttttacaaatgagggtatggggatgggtactatagta 41410445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 44792775 - 44792842
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||| ||||||||||||||| |||||||||||||| || ||| | | ||||||||| |||||||    
T  44792775 gggcacggatacgggtattttttataaatgcgggtatggggacgggcattgtagtaccctacccattg 44792842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 19618655 - 19618593
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||| ||||||||| |||||||||||||| || ||  | | |||||||||||||||||    
T  19618655 cgggtacggatattttttataaatgcgggtatggggacggacaatgtagtaccctgcccattg 19618593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 23299653 - 23299719
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccatt 79  Q
    |||| ||||||||| || |||||| |||||||||||||| |||||| | | ||||||||| ||||||    
T  23299653 gggcacgggtacggataatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccatt 23299719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 48583705 - 48583639
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccatt 79  Q
    |||| ||||||||| | |||||||||||  ||||||||| |||| ||||||||||||  ||||||||    
T  48583705 gggctcgggtacggattttttttacaaactcgggtatggggatgagtactatagtactatgcccatt 48583639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 43657235 - 43657186
Alignment:
Q  21 gtacgggtattttttacaaatgcgggtatggagatgggtactatagtacc 70  Q
    ||||||| |||||||||||| | |||||||| ||||| ||||||||||||    
T  43657235 gtacgggcattttttacaaacgtgggtatggggatggatactatagtacc 43657186  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 48080043 - 48079982
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||| || |||||||||||| |||||||| |||||| | | ||||||||| |||||||    
T  48080043 gggtacggataatttttacaaatgtgggtatggggatgggcattgtagtaccctacccattg 48079982  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 35688262 - 35688210
Alignment:
Q  28 tattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||||||||||| ||||||||||  || | |||||||||||||| |||||||    
T  35688262 tattttttacaaacgcgggtatgggaatagatactatagtaccctacccattg 35688210  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 42096891 - 42096931
Alignment:
Q  29 attttttacaaatgcgggtatggagatgggtactatagtac 69  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  42096891 attttttacaaatgagggtatggggacgggtactatagtac 42096931  T

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Target: scaffold0160 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 26263 - 26313
Alignment:
Q  22 tacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  26263 tacgggtattttttacaaacgcgggtatggggatgggtactatagtaccct 26313  T

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Target: scaffold0242 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 13200 - 13267
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||| ||||||||| ||||| |||||||||| |||||||||||| ||||| |||||||||    
T  13200 gggctcgggtacaggtatttttcacaaacgcgggtatggggatgggtactattgtaccttgcccattg 13267  T

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Target: scaffold0242; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 22035 - 22102
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||| ||||||||| ||||| |||||||||| |||||||||||| ||||| |||||||||    
T  22035 gggctcgggtacaggtatttttcacaaacgcgggtatggggatgggtactattgtaccttgcccattg 22102  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 6799554 - 6799616
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||||||| |||||||||||| |||||||||| ||||| |||||||||||| | |||||||    
T  6799554 cgggtacgggcattttttacaaacgcgggtatggggatggatactatagtaccttacccattg 6799616  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 9062274 - 9062328
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||    
T  9062274 cgggtacgggcattttttacaaacgcgggtatggggatggatactatagtaccct 9062328  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 1329684 - 1329752
Alignment:
Q  12 agggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    ||||| |||||||| |||||||||| |||||||||||||| || ||  ||| |||||||||||||||||    
T  1329684 agggcacgggtacgagtattttttataaatgcgggtatggggacggacactgtagtaccctgcccattg 1329752  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 1221837 - 1221896
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |||||||| ||||| ||||||||||||||    
T  1221837 gggctcgggtacggacattttttacaaatgagggtatggggatggatactatagtaccct 1221896  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 6938037 - 6937978
Alignment:
Q  19 gggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccat 78  Q
    ||||||||||| ||||||||||||||||||||| |||||| | | ||||||||| |||||    
T  6938037 gggtacgggtaatttttacaaatgcgggtatggggatgggcattgtagtaccctacccat 6937978  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 24447248 - 24447307
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccct 72  Q
    |||| |||||||||  |||||||||||||| |||||||| ||||| ||||||||||||||    
T  24447248 gggctcgggtacggacattttttacaaatgagggtatggggatggatactatagtaccct 24447307  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 6337215 - 6337153
Alignment:
Q  18 cgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||||| || ||||| ||||||||| |||||||| |||||| ||||||||||||| |||||||    
T  6337215 cgggtatggatatttcttacaaatgtgggtatggggatgggcactatagtaccctacccattg 6337153  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 6338059 - 6338125
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccatt 79  Q
    |||||||  |||| |||||||||||||| ||||||||||||||| ||| |||| | |||||||||||    
T  6338059 gggcccgaatacgtgtattttttacaaacgcgggtatggagatgagtattataattccctgcccatt 6338125  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 33331587 - 33331546
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggaga 54  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  33331587 gggcacgggtacgggtattttttataaatgcgggtatggaga 33331546  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 240594 - 240661
Alignment:
Q  13 gggcccgggtacgggtattttttacaaatgcgggtatggagatgggtactatagtaccctgcccattg 80  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||| ||| || |||||| |||||||    
T  240594 gggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtaataccctacccattg 240661  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 110142 - 110190
Alignment:
Q  22 tacgggtattttttacaaatgcgggtatggagatgggtactatagtacc 70  Q
    |||||| |||||||||||| |||||||||||||||| |||| |||||||    
T  110142 tacgggcattttttacaaacgcgggtatggagatggatactgtagtacc 110190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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