View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6948_low_39 (Length: 228)
Name: NF6948_low_39
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_39 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 37059626 - 37059840
Alignment:
| Q |
14 |
gaactacaagggctgtatctggatggaaataagatatcaggagatattccaaactctcttggtaatcttataaagttaaacaagattgatttgtcaagaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37059626 |
gaactacaagggctgtatctggatggaaataagatatcaggagatattccaaactctcttggtaatcttataaagttaaacaagattgatttgtcaagaa |
37059725 |
T |
|
| Q |
114 |
atgaacttgtaggtagaataccagttagttttggtaattttcaaaacctgctctacatggacttatctagcaataagctcaatggaagcatacctgtgga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37059726 |
atgaacttgtaggtagaataccagttagttttggtaattttcaaaacctgctctacatggacttatctagcaataagctcaatggaagcatacctgtgga |
37059825 |
T |
|
| Q |
214 |
aatcctcaatatacc |
228 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37059826 |
aatcctcaatatacc |
37059840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 37067105 - 37067310
Alignment:
| Q |
17 |
ctacaagggctgtatctggatggaaataagatatcaggagatattccaaactctcttggtaatcttataaagttaaacaagattgatttgtcaagaaatg |
116 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
37067105 |
ctacaagagctatatctggatggaaataagataacaggagctattccaaactctcttggtaatctcataaacttaaacaagattgatttgtcaagaaatt |
37067204 |
T |
|
| Q |
117 |
aacttgtaggtagaataccagttagttttggtaattttcaaaacctgctctacatggacttatctagcaataagctcaatggaagcatacctgtggaaat |
216 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
37067205 |
tacttgttggtagaataccaataagttttggtaattttcaaaacctgctctacatggatttatctagcaacaaactcaatggaagcatacctgcggaaat |
37067304 |
T |
|
| Q |
217 |
cctcaa |
222 |
Q |
| |
|
|||||| |
|
|
| T |
37067305 |
cctcaa |
37067310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University