View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6948_low_41 (Length: 222)

Name: NF6948_low_41
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6948_low_41
NF6948_low_41
[»] chr6 (19 HSPs)
chr6 (19-203)||(14015792-14015976)
chr6 (89-200)||(13874611-13874722)
chr6 (88-203)||(13932988-13933103)
chr6 (90-203)||(14025921-14026034)
chr6 (88-203)||(13862140-13862255)
chr6 (90-201)||(13892316-13892427)
chr6 (86-203)||(14085307-14085424)
chr6 (19-82)||(13892173-13892236)
chr6 (19-82)||(14048163-14048226)
chr6 (90-203)||(14047970-14048083)
chr6 (19-82)||(13933181-13933244)
chr6 (109-176)||(14111143-14111210)
chr6 (19-92)||(14085490-14085563)
chr6 (88-176)||(13472307-13472395)
chr6 (21-82)||(14026114-14026175)
chr6 (22-83)||(14111308-14111369)
chr6 (35-83)||(13874485-13874533)
chr6 (34-82)||(13472181-13472229)
chr6 (35-82)||(13862015-13862062)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 14015976 - 14015792
Alignment:
Q  19 aatggcacactatccaatctctcaatattctcatctttggaaatatttgatatttctgaaaataaagtaaatggtgtgatctcagacttccattttgctg 118  Q
    |||||||||||| |  |||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||||    
T  14015976 aatggcacactacctgatctctcaatattctcatttttggaaatatttcatatttctgaaaataaaattaatggtgtgatttcagacttccattttgctg 14015877  T
Q  119 gtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttacccaaaaatggatgccaccttttcaact 203  Q
    |||||||||||||||||||||||  |||||| |||||||||||| |||||| ||||||  |||| ||| | ||||||||||||||    
T  14015876 gtatgtcaatgttaaaggaattagacttgtcagacaattcactagcattgacatttactgaaaattgggtcccaccttttcaact 14015792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 13874611 - 13874722
Alignment:
Q  89 atggtgtgatctcagacttccattttgctggtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttacccaaaaatggat 188  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||  ||||||||||||| |||| ||| |    
T  13874611 atggtgtgatctctgaattccatttttctggtatgtcaatgttaaaggaattagacttgtctgacaattcactagtattgagatttaccgaaaactgggt 13874710  T
Q  189 gccaccttttca 200  Q
     || ||||||||    
T  13874711 cccgccttttca 13874722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 13933103 - 13932988
Alignment:
Q  88 aatggtgtgatctcagacttccattttgctggtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttacccaaaaatgga 187  Q
    |||||||||||||| || || |||||| ||||||||||||||||||||||||||  |||||| |||||||||||| |||||||||||||  |||| |||     
T  13933103 aatggtgtgatctctgaatttcatttttctggtatgtcaatgttaaaggaattagacttgtcagacaattcactagcattgagatttactgaaaattggg 13933004  T
Q  188 tgccaccttttcaact 203  Q
    | ||||||||||||||    
T  13933003 tcccaccttttcaact 13932988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 14026034 - 14025921
Alignment:
Q  90 tggtgtgatctcagacttccattttgctggtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttacccaaaaatggatg 189  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||||||  ||||||||||||||||||  |||||| ||||||  |||| ||| |     
T  14026034 tggtgtgatctcagaatttcatttttctggtatgtcaatgttaaaggaattagacttgtctgacaattcacttgcattgacatttactgaaaattgggtc 14025935  T
Q  190 ccaccttttcaact 203  Q
    ||||||||||||||    
T  14025934 ccaccttttcaact 14025921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 13862140 - 13862255
Alignment:
Q  88 aatggtgtgatctcagacttccattttgctggtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttacccaaaaatgga 187  Q
    |||||||||||||| || || |||||| |||||||||||||||||||||| |||  |||||| | |||||||||| |||||||||||| | |||| |||     
T  13862140 aatggtgtgatctctgaatttcatttttctggtatgtcaatgttaaaggatttagacttgtcaggcaattcactagcattgagatttaacgaaaattggg 13862239  T
Q  188 tgccaccttttcaact 203  Q
    ||||||||||||||||    
T  13862240 tgccaccttttcaact 13862255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 13892316 - 13892427
Alignment:
Q  90 tggtgtgatctcagacttccattttgctggtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttacccaaaaatggatg 189  Q
    |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||   |||||||||| || |||||||| ||||||| ||| |     
T  13892316 tggtgtgatctctgacttccatttttctggtatgtcaatgttagaggaattatccttgtcaagcaattcactagcaatgagatttccccaaaattgggtc 13892415  T
Q  190 ccaccttttcaa 201  Q
    || |||||||||    
T  13892416 cctccttttcaa 13892427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 14085424 - 14085307
Alignment:
Q  86 taaatggtgtgatctcagacttccattttgctggtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttacccaaaaatg 185  Q
    |||||||||||||||| |||||||||||| |||||||||||||| || |||| |||  ||||||| |||||| |||| |||| || ||| || |||||||    
T  14085424 taaatggtgtgatctctgacttccatttttctggtatgtcaatgctagaggagttagacttgtcttacaatttactagcattaagttttgccgaaaaatg 14085325  T
Q  186 gatgccaccttttcaact 203  Q
    | | || |||||||||||    
T  14085324 ggtcccgccttttcaact 14085307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 13892173 - 13892236
Alignment:
Q  19 aatggcacactatccaatctctcaatattctcatctttggaaatatttgatatttctgaaaata 82  Q
    |||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13892173 aatggcacactacctgatctctcgatattctcatctttggaaatatttgatatttctgaaaata 13892236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 14048226 - 14048163
Alignment:
Q  19 aatggcacactatccaatctctcaatattctcatctttggaaatatttgatatttctgaaaata 82  Q
    ||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14048226 aatgggacactacctaatctctcaatattctcatttttggaaatatttgatatttctgaaaata 14048163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 14048083 - 14047970
Alignment:
Q  90 tggtgtgatctcagacttccattttgctggtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttacccaaaaatggatg 189  Q
    |||||||||||| ||||||||||||  |||||||||||||||||   | ||||  ||||||||||| ||| || |||||||||||||| |||| ||| |     
T  14048083 tggtgtgatctctgacttccatttttatggtatgtcaatgttaagatacttatatttgtctgacaactcaatagcattgagatttaccgaaaactgggtc 14047984  T
Q  190 ccaccttttcaact 203  Q
    || |||||||||||    
T  14047983 ccgccttttcaact 14047970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 13933244 - 13933181
Alignment:
Q  19 aatggcacactatccaatctctcaatattctcatctttggaaatatttgatatttctgaaaata 82  Q
    |||||||||||| |  |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  13933244 aatggcacactacctgatctctcaatattctcatttttggaaatattcgatatttctgaaaata 13933181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 14111210 - 14111143
Alignment:
Q  109 cattttgctggtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttac 176  Q
    |||||| |||||||||| |||||||||||||||  ||||||||||||||||||| |||||| ||||||    
T  14111210 catttttctggtatgtcgatgttaaaggaattagacttgtctgacaattcactagcattgacatttac 14111143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 14085563 - 14085490
Alignment:
Q  19 aatggcacactatccaatctctcaatattctcatctttggaaatatttgatatttctgaaaataaagtaaatgg 92  Q
    |||||||||||| |  |||| ||||||||||| | ||||||||||||||||||||||||||||| | |||||||    
T  14085563 aatggcacactacctgatctgtcaatattctcctttttggaaatatttgatatttctgaaaatagactaaatgg 14085490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 13472307 - 13472395
Alignment:
Q  88 aatggtgtgatctcagacttccattttgctggtatgtcaatgttaaaggaattatccttgtctgacaattcactaacattgagatttac 176  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||   | ||||  ||||||||||| |||||  |||||||||||||    
T  13472307 aatggcgtgatctccgacttccatttttctggtatgtcaatgttaagatatttatatttgtctgacaactcactggcattgagatttac 13472395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 14026175 - 14026114
Alignment:
Q  21 tggcacactatccaatctctcaatattctcatctttggaaatatttgatatttctgaaaata 82  Q
    |||||||||| |  ||||||||||||||| || ||||||||| |||||||||||||||||||    
T  14026175 tggcacactacctgatctctcaatattcttatttttggaaatgtttgatatttctgaaaata 14026114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 14111369 - 14111308
Alignment:
Q  22 ggcacactatccaatctctcaatattctcatctttggaaatatttgatatttctgaaaataa 83  Q
    ||||||||| |  |||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  14111369 ggcacactacctgatctctcaatattcccatttttggagatatttgatatttctgaaaataa 14111308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 13874485 - 13874533
Alignment:
Q  35 atctctcaatattctcatctttggaaatatttgatatttctgaaaataa 83  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  13874485 atctctcaatattctcattcttggaaatatttgatatttctaaaaataa 13874533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 13472181 - 13472229
Alignment:
Q  34 aatctctcaatattctcatctttggaaatatttgatatttctgaaaata 82  Q
    ||||| ||||||||||||| |||||||| ||| ||||||||||||||||    
T  13472181 aatctttcaatattctcatttttggaaacattcgatatttctgaaaata 13472229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 13862015 - 13862062
Alignment:
Q  35 atctctcaatattctcatctttggaaatatttgatatttctgaaaata 82  Q
    ||||||||||||||||   |||||||||||||||||||||| ||||||    
T  13862015 atctctcaatattctcccttttggaaatatttgatatttctaaaaata 13862062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University