View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6948_low_43 (Length: 207)
Name: NF6948_low_43
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 10238384 - 10238552
Alignment:
| Q |
27 |
aaactatgcttcatccctacgagaccgacaacctcgtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcac |
126 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10238384 |
aaactatgcttcatcc-taggagaccgacaacctcgtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcac |
10238482 |
T |
|
| Q |
127 |
ttccgccacaatctcaaactccggcgacttagcatccatcaccaaaaacttagactctcccttcttctca |
196 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
10238483 |
ttccgccacaatctcaaactccggagacttagcatccatcaccaaaaaccttgactctcccttcttctca |
10238552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 10256217 - 10256056
Alignment:
| Q |
35 |
cttcatccctacgagaccgacaacctcgtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgcca |
134 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10256217 |
cttcatccctacgacaccgacaacttggtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgcca |
10256118 |
T |
|
| Q |
135 |
caatctcaaactccggcgacttagcatccatcaccaaaaacttagactctcccttcttctca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10256117 |
caatctcaaactccggcgacttagcatccatcaccaaaaacttagactctccctttttctca |
10256056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 10229616 - 10229772
Alignment:
| Q |
40 |
tccctacgagaccgacaacctcgtgatgtcactctctttcacaaacaatccatgaaaaccataaggcaccctccttggcaacttcacttccgccacaatc |
139 |
Q |
| |
|
||||||||| ||||||||| | || |||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
10229616 |
tccctacgacaccgacaacttggttatgtcactttgcttcacaaacaatccatgaaaaccatagggcaccctcctcggcaacttcacctccgccacaatc |
10229715 |
T |
|
| Q |
140 |
tcaaactccggcgacttagcatccatcaccaaaaacttagactctcccttcttctca |
196 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10229716 |
tcaaactctggcgacttcgcatccatcaccaaaaacttagattctcccttcttctca |
10229772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University