View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_44 (Length: 202)
Name: NF6948_low_44
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 16497821 - 16497929
Alignment:
| Q |
3 |
ttgttttatttttgttgtgttgaaaaccgccgtattgaaaatacaaactgtaatgatactgactacgaagaattcatggttcttcttaatggaactaaga |
102 |
Q |
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| T |
16497821 |
ttgttttatttttgtggttatgctaaccgccgtattgaaaatacaaactgtaatgatactgactacgaagaattcatggttcttcttaatggaactaaga |
16497920 |
T |
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| Q |
103 |
taacagatc |
111 |
Q |
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| T |
16497921 |
taacagatc |
16497929 |
T |
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Target: chr8; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 16506764 - 16506869
Alignment:
| Q |
3 |
ttgttttatttttgttgtgttgaaaaccgccgtattgaaaatacaaactgtaatgatactgactacgaagaattcatggttcttcttaatggaactaaga |
102 |
Q |
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||||||||||||||| || || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16506764 |
ttgttttatttttgtggtcatggtaaccgccgtaatgaaaatacaaactgtaatgatactgactacgaagaattcatggttcttcttaatggaactaaga |
16506863 |
T |
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| Q |
103 |
taacag |
108 |
Q |
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|||||| |
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| T |
16506864 |
taacag |
16506869 |
T |
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