View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6948_low_5 (Length: 451)

Name: NF6948_low_5
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6948_low_5
NF6948_low_5
[»] chr2 (3 HSPs)
chr2 (8-435)||(33652536-33652963)
chr2 (142-309)||(30922482-30922649)
chr2 (306-432)||(30922326-30922452)
[»] chr1 (2 HSPs)
chr1 (19-315)||(47388569-47388865)
chr1 (306-436)||(47388415-47388545)
[»] chr7 (2 HSPs)
chr7 (19-309)||(42921890-42922180)
chr7 (306-436)||(42922210-42922340)
[»] chr6 (8 HSPs)
chr6 (13-310)||(22977129-22977426)
chr6 (13-309)||(2626227-2626523)
chr6 (13-310)||(23810976-23811273)
chr6 (37-291)||(34325111-34325365)
chr6 (306-437)||(2626066-2626197)
chr6 (306-437)||(22976969-22977100)
chr6 (306-437)||(23811302-23811433)
chr6 (340-436)||(34325362-34325458)
[»] chr8 (8 HSPs)
chr8 (19-309)||(45287813-45288103)
chr8 (19-309)||(19251835-19252112)
chr8 (19-309)||(19325019-19325296)
chr8 (19-266)||(3753107-3753354)
chr8 (306-436)||(19252142-19252272)
chr8 (306-436)||(19325326-19325456)
chr8 (306-436)||(45287652-45287783)
chr8 (326-436)||(3753350-3753460)
[»] chr5 (1 HSPs)
chr5 (306-433)||(4802526-4802653)
[»] scaffold0103 (2 HSPs)
scaffold0103 (306-437)||(11585-11716)
scaffold0103 (198-309)||(11444-11555)


Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 33652963 - 33652536
Alignment:
Q  8 acattatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaa 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33652963 acataatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaa 33652864  T
Q  108 agcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatgga 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33652863 agcaatgctacctcacctaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatgga 33652764  T
Q  208 taaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatacttttt 307  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33652763 taaatgatgaggtggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatacttttt 33652664  T
Q  308 catggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttggc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33652663 catggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagtaagtgtttggc 33652564  T
Q  408 acattgaattatttgtttttattgaaca 435  Q
    ||||||||||||||||||||||||||||    
T  33652563 acattgaattatttgtttttattgaaca 33652536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 142 - 309
Target Start/End: Complemental strand, 30922649 - 30922482
Alignment:
Q  142 aaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaa 241  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||  |||    
T  30922649 aaatctatactcctccgccaagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggagaactcttcaaaagtgatgaa 30922550  T
Q  242 aggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttca 309  Q
    |  ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30922549 aaaatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggattgatactttttca 30922482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 306 - 432
Target Start/End: Complemental strand, 30922452 - 30922326
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  30922452 ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttg 30922353  T
Q  406 gcacattgaattatttgtttttattga 432  Q
    ||| ||||||||||||||| |||||||    
T  30922352 gcaaattgaattatttgttgttattga 30922326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 47388865 - 47388569
Alignment:
Q  19 acatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctac 118  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  47388865 acatgatcacaacttcaacagctgcattacctaacaaaccattaatatatactgctgtgaattctaaggtgaatcaggaaatagaagaaagaaatgttac 47388766  T
Q  119 ctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgag 218  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47388765 ctcacctaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgag 47388666  T
Q  219 gcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttcatggaag 315  Q
    | | ||||||||||||||| ||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47388665 gagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggattgatactttttcatagaag 47388569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 306 - 436
Target Start/End: Complemental strand, 47388545 - 47388415
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||| |||||||| |||||| ||||||||| || |||||||||    
T  47388545 ttcatggaagttatgagttctctttattcatgcttttggttattcaatatttcaaaatagagtttactttatccattattagctcagaagaaagtgtttg 47388446  T
Q  406 gcacattgaattatttgtttttattgaacat 436  Q
    ||| ||||||||||||||| |||||||||||    
T  47388445 gcaaattgaattatttgttgttattgaacat 47388415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 42921890 - 42922180
Alignment:
Q  19 acatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctac 118  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  42921890 acatgatcacaacttctacagctgcattacctaacaaaccattaatatatactgctgtgaattctaaggtgaatcaggaaatagaagaaagtaatgttac 42921989  T
Q  119 ctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgag 218  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42921990 ctcacctaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagtatcaatccacaacaggaagaaatggataaatgatgag 42922089  T
Q  219 gcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttca 309  Q
    | | ||||||||||||||| ||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42922090 gagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggattgatactttttca 42922180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 306 - 436
Target Start/End: Original strand, 42922210 - 42922340
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| |||| | || |||||||||  ||||||||||||||| ||||||||||||||| ||| |||||||| |||| ||||    
T  42922210 ttcatggaagttatgagttctctttatccgtactcttggttattgaatatttcaaaagagagtttactttgtccattattaactcagtagaaagtctttg 42922309  T
Q  406 gcacattgaattatttgtttttattgaacat 436  Q
    ||| ||||||||||||||| |||||||||||    
T  42922310 gcaaattgaattatttgttgttattgaacat 42922340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 22977426 - 22977129
Alignment:
Q  13 atactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaa 112  Q
    ||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  22977426 atactaacatgatcacaacttctacagatgcattacctaacaaaccattaatatatactgctgtgaattctaaggtgaatcaggaaatagaagaaagtaa 22977327  T
Q  113 tgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaat 212  Q
    || ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22977326 tgttacctcacctaaagtctcatagattcaaatctctactcctcagccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaat 22977227  T
Q  213 gatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttcat 310  Q
    ||||||| | ||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22977226 gatgaggagaactcttcaaaagtggtgaaaggatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggattgatactttttcat 22977129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 2626523 - 2626227
Alignment:
Q  13 atactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaa 112  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  2626523 atactaacatgatcacaacttctacagctgcattacctaacaaaccattaatatatactgctgtgaattctaaggtgaatcaggaaatagaagaaagtaa 2626424  T
Q  113 tgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaat 212  Q
    || ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2626423 tgttacctcacctaaagtctcatagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacagaaagaaatggataaat 2626324  T
Q  213 gatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttca 309  Q
    ||||||| | |||||||||||||||  |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626323 gatgaggagaactcttcaaaagtggttaaaggatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggattgatactttttca 2626227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 23810976 - 23811273
Alignment:
Q  13 atactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaa 112  Q
    ||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  23810976 atactaacatgatcacaacttctacagttgcattacctaacaaaccattaatatatactgctgtgaattctaaggtgaatcaggaaatagaagaaagtaa 23811075  T
Q  113 tgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaat 212  Q
    || ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23811076 tgttacctcacctaaagtctcatagattcaaatctctactcctctgccgagtaaccatgcaatgcaagaatcaatccacaacaggaagaaatggataaat 23811175  T
Q  213 gatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttcat 310  Q
    ||||||| | ||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23811176 gatgaggagaactcttcaaaagtggtgaaaggatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggattgatactttttcat 23811273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 37 - 291
Target Start/End: Original strand, 34325111 - 34325365
Alignment:
Q  37 cagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcaga 136  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| |||| ||||||||| ||||||| |||    
T  34325111 cagctgcattacctaacaaaccattaatatatactgttgtgaattctaaggtgaatcagaaaatagaagaaagtaatgttacctcacctaaagtctgaga 34325210  T
Q  137 gattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  34325211 gattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggagaactcttcaaaagtg 34325310  T
Q  237 gcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttg 291  Q
    | ||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  34325311 gtgaaagaatttcgtaagcttattttctttggaagaaggagttgaagaacctttg 34325365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 2626197 - 2626066
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||     
T  2626197 ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcaatagaaagtgttta 2626098  T
Q  406 gcacattgaattatttgtttttattgaacatg 437  Q
    ||| ||||||||||||||| ||||||||||||    
T  2626097 gcaaattgaattatttgttgttattgaacatg 2626066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 22977100 - 22976969
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||| ||  |||||||||    
T  22977100 ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagatagtttactttgtccattattagctcaataaaaagtgtttg 22977001  T
Q  406 gcacattgaattatttgtttttattgaacatg 437  Q
    ||| ||||||||||||||| ||||| ||||||    
T  22977000 gcaaattgaattatttgttgttattaaacatg 22976969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 23811302 - 23811433
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||| ||  |||||||||    
T  23811302 ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagatagtttactttgtccattattagctcaataaaaagtgtttg 23811401  T
Q  406 gcacattgaattatttgtttttattgaacatg 437  Q
    ||| ||||||||||||||| ||||| ||||||    
T  23811402 gcaaattgaattatttgttgttattaaacatg 23811433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 340 - 436
Target Start/End: Original strand, 34325362 - 34325458
Alignment:
Q  340 tttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttggcacattgaattatttgtttttattgaacat 436  Q
    ||||||||||| |||||| |||||||| ||||||||||||||| |||||||||||| ||||||||| || ||||||||||||||| |||||||||||    
T  34325362 tttggttattcaatatttgaaaagagagtttactttgtccattattagctcagtagaaagtgtttgacaaattgaattatttgttgttattgaacat 34325458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 45288103 - 45287813
Alignment:
Q  19 acatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctac 118  Q
    |||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  45288103 acatgatcacaacttctacagctgcattacctaacaaaccatcaatatatactgctgtgaattctaaggtgaatcaggaaatagaagaaagtaatgttac 45288004  T
Q  119 ctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgag 218  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45288003 ctcacctaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgattag 45287904  T
Q  219 gcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttca 309  Q
    | | ||||||||||||||| ||||| ||| ||||| ||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  45287903 gagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaagaagttgaaaaacctttgtgggttgatactttttca 45287813  T

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Target: chr8; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 19251835 - 19252112
Alignment:
Q  19 acatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctac 118  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||| |||    
T  19251835 acatgatcacaacttctacagttgcattacctaacaaaccattaatatataccgttgtgaattctaaggtgaatcaggaaatagaagaaagtaatgttac 19251934  T
Q  119 ctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgag 218  Q
    |||||| ||||||||             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  19251935 ctcacctaaagtctc-------------tctactcctccgccgagtaaccaagcaatacaagaatcaatccacaacaggaagaaatggataaataatgag 19252021  T
Q  219 gcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttca 309  Q
    | | ||||||||||||||| ||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19252022 gagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggattgatactttttca 19252112  T

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Target: chr8; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 19325019 - 19325296
Alignment:
Q  19 acatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctac 118  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||| |||    
T  19325019 acatgatcacaacttctacagttgcattacctaacaaaccattaatatataccgttgtgaattctaaggtgaatcaggaaatagaagaaagtaatgttac 19325118  T
Q  119 ctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgag 218  Q
    |||||| ||||||||             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  19325119 ctcacctaaagtctc-------------tctactcctccgccgagtaaccaagcaatacaagaatcaatccacaacaggaagaaatggataaataatgag 19325205  T
Q  219 gcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttca 309  Q
    | | ||||||||||||||| ||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19325206 gagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggattgatactttttca 19325296  T

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Target: chr8; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 3753107 - 3753354
Alignment:
Q  19 acatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctac 118  Q
    |||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||    
T  3753107 acatgatcacaacttctactgctgtattacctaacaaaccattaatatatactgctgtgaattctaaggtgaatcagaaaatagaagaaagtaatgttac 3753206  T
Q  119 ctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgag 218  Q
    |||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753207 ctcacctaaagtctcagagattcaaatatctactcctccgtcgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgag 3753306  T
Q  219 gcggactcttcaaaagtggcgaaaggattccgtaaacttatcttcttt 266  Q
    | | ||||||||||||||| ||||| |||  |||| ||||| ||||||    
T  3753307 gagaactcttcaaaagtggtgaaagaattttgtaagcttattttcttt 3753354  T

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Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 306 - 436
Target Start/End: Original strand, 19252142 - 19252272
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  19252142 ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttg 19252241  T
Q  406 gcacattgaattatttgtttttattgaacat 436  Q
    ||| ||||||||||||||| |||||||||||    
T  19252242 gcaaattgaattatttgttgttattgaacat 19252272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 306 - 436
Target Start/End: Original strand, 19325326 - 19325456
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  19325326 ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttg 19325425  T
Q  406 gcacattgaattatttgtttttattgaacat 436  Q
    ||| ||||||||||||||| |||||||||||    
T  19325426 gcaaattgaattatttgttgttattgaacat 19325456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 306 - 436
Target Start/End: Complemental strand, 45287783 - 45287652
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtg-ttt 404  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||| |||||| ||||| |||    
T  45287783 ttcatggaagttatgagttctctttatccatgcatttggttattcaatatttcaaaagagagtttactttgtccattattagcccagtagaaagtgtttt 45287684  T
Q  405 ggcacattgaattatttgtttttattgaacat 436  Q
    |||| ||||||||||||||| |||||||||||    
T  45287683 ggcaaattgaattatttgttgttattgaacat 45287652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 326 - 436
Target Start/End: Original strand, 3753350 - 3753460
Alignment:
Q  326 tcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttggcacattgaattatttgttt 425  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||     
T  3753350 tctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttggcaaattgaattatttgttg 3753449  T
Q  426 ttattgaacat 436  Q
    |||||||||||    
T  3753450 ttattgaacat 3753460  T

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Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 306 - 433
Target Start/End: Complemental strand, 4802653 - 4802526
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  4802653 ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttg 4802554  T
Q  406 gcacattgaattatttgtttttattgaa 433  Q
    ||| ||||||||||||||| ||||||||    
T  4802553 gcaaattgaattatttgttgttattgaa 4802526  T

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Target: scaffold0103 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 11585 - 11716
Alignment:
Q  306 ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||| ||| ||||||||     
T  11585 ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttatccattattagctcaatagaaagtgttta 11684  T
Q  406 gcacattgaattatttgtttttattgaacatg 437  Q
    ||| ||||||||||||||| ||||||||||||    
T  11685 gcaaattgaattatttgttgttattgaacatg 11716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 198 - 309
Target Start/End: Original strand, 11444 - 11555
Alignment:
Q  198 aagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggatt 297  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  11444 aagaaatggataaatgatgaggagaactcttcaaaagtggtgaaaggatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggatt 11543  T
Q  298 gatactttttca 309  Q
    ||||||||||||    
T  11544 gatactttttca 11555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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