View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_7 (Length: 399)
Name: NF6948_low_7
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_7 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 162 - 389
Target Start/End: Complemental strand, 18904 - 18675
Alignment:
| Q |
162 |
gttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctgataagtagtaacttaattatgaaaagttgattaaataaagc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18904 |
gttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctaataagtagtaatttaattatgaaaagttgattaaataaagc |
18805 |
T |
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| Q |
262 |
ctatcaccggatctgcaaaataattcatgtcaaaagcatctgtattctct--nnnnnnnnnnnnngcttatgtattctctgttctacggttgctaaatca |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |
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| T |
18804 |
ctatcaccggatctgcaaaataattcatgtcaaaagcatctgtattctctaaaaaaaaaaaaaaagcttctgtattctctgttctactgttgctaaatca |
18705 |
T |
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| Q |
360 |
aaaaatatatattcttccatctctgctact |
389 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
18704 |
aaaaatatatattcttccatctcttctact |
18675 |
T |
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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 51720241 - 51720147
Alignment:
| Q |
162 |
gttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctgataagtagtaacttaattatgaaaagttgattaaat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
51720241 |
gttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctaataagtagtaatttaattatgaaaagttgattaaat |
51720147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 51720387 - 51720310
Alignment:
| Q |
15 |
atataatatttttctgacataaagttgtacggctggtgatactatactagtagttgttaacttccactgtagctaatg |
92 |
Q |
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| T |
51720387 |
atataatatttttctgacataaagttgtacggctggtgatactatactagtagttattaacttttactgtagctaatg |
51720310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 51720148 - 51720088
Alignment:
| Q |
329 |
atgtattctctgttctacggttgctaaatcaaaaaatatatattcttccatctctgctact |
389 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51720148 |
atgtattctctgttctactgttgctaaatcaaaaaatatatattcttccatctcttctact |
51720088 |
T |
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 2754342 - 2754259
Alignment:
| Q |
162 |
gttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctgataagtagtaacttaattatgaaaa |
245 |
Q |
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| T |
2754342 |
gttcgagtttaaacatttatttagattcattattattttgaaatagattaatacatctgataagtagtatttttattatgaaaa |
2754259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 39084469 - 39084386
Alignment:
| Q |
162 |
gttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctgataagtagtaacttaattatgaaaa |
245 |
Q |
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|
|||||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| |
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| T |
39084469 |
gttcgagtttaaacatttatttagattcattattattttgaaatagattaatacatctgataagtagtatttttattatgaaaa |
39084386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 52174095 - 52174028
Alignment:
| Q |
163 |
ttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctgataagtagta |
230 |
Q |
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|||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
52174095 |
ttcgagttccagcatttatttagattgattattattttgaaataggttaatacatcttataagtagta |
52174028 |
T |
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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 52176071 - 52176003
Alignment:
| Q |
162 |
gttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctgataagtagta |
230 |
Q |
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|
||||||||| ||||||||||| ||| ||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
52176071 |
gttcgagttctagcatttatttagattgattattattttgaaataggttaatacatcttataagtagta |
52176003 |
T |
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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 342 - 389
Target Start/End: Original strand, 43942422 - 43942469
Alignment:
| Q |
342 |
tctacggttgctaaatcaaaaaatatatattcttccatctctgctact |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43942422 |
tctacggttgctaaatcaaaaaatatatattcttccatctcttctact |
43942469 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 25148811 - 25148876
Alignment:
| Q |
162 |
gttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctgataagta |
227 |
Q |
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|||||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
25148811 |
gttcgagtttaaacatttatttagattcattattattttgaaatagattaatacatctgattagta |
25148876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 34368553 - 34368620
Alignment:
| Q |
163 |
ttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctgataagtagta |
230 |
Q |
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|||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
34368553 |
ttcgagttccagcatttatttagattgattattattttgaaataggttaatacatcttataagtagta |
34368620 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 13450193 - 13450276
Alignment:
| Q |
162 |
gttcgagtttcagcatttatttcaattcattattattttaaaatagattaatacatctgataagtagtaacttaattatgaaaa |
245 |
Q |
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|||||||||| | ||||||||| || || || |||||| ||||||||||||||||||||||||||||| || |||||||||| |
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| T |
13450193 |
gttcgagtttaaacatttatttagatccaataatattttgaaatagattaatacatctgataagtagtatttttattatgaaaa |
13450276 |
T |
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