View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_8 (Length: 394)
Name: NF6948_low_8
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 50423886 - 50423508
Alignment:
| Q |
1 |
attgaaccaagactcacgcaagatgcgacgagccggagaaagaaggaaactacaaggatgccgccttttagcgtaacatcacccaacaaatataagaact |
100 |
Q |
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| T |
50423886 |
attgaaccaaaactcacgcaagatgcgacgagccggagaaagaaggaaactacaaagatgccgccttttagcgtaacatcacccaacaaatataagaact |
50423787 |
T |
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| Q |
101 |
aaaaccaggcaagcaccccaagaatctaagattgcgaaagctatgtctttgaaatctagcgatccacaccaaaattcaatcccatagccaagccttacaa |
200 |
Q |
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| T |
50423786 |
aaaaccaggcaagcaccccaagaatctaagattgcgaaagctatgtctttgaaatctagcgatccacaccaaaattcaatcccatagccaagccttataa |
50423687 |
T |
|
| Q |
201 |
acaacaggccagcaaccaacaaatcccctaaaacactgcaatacagcagaagctgctgctgaactgtcacaacc--agcagcacatcagcgctgtcagca |
298 |
Q |
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| T |
50423686 |
acaacaggccagcaaccaacaaatcccctaaaacattgcaatacagcagaagctgctgctgaactgtcacaaccatagcagcacatcagcgctgtcagca |
50423587 |
T |
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| Q |
299 |
gaataacagcacggctgggacgagcctgaccaccaaacagcagcagattaaggcaccagaacttgacggggacaccaac |
377 |
Q |
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| T |
50423586 |
gaataacagcacggctgggacgagcctgaccaccaaacagcagcagattaacgcaccagaacttgacggggacaccaac |
50423508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 4636553 - 4636616
Alignment:
| Q |
257 |
tgctgaactgtcacaaccagcagcacatcagcgctgtcagcagaataacagcacggctgggacg |
320 |
Q |
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| T |
4636553 |
tgctgaactgtcaaaaacagcagcacatcagcgctgccagcagaagaccagcacagctgggacg |
4636616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 4636257 - 4636329
Alignment:
| Q |
7 |
ccaagactcacgcaagatgcgacgagccggagaaagaaggaaactacaaggatgccgccttttagcgtaacat |
79 |
Q |
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|||| |||| ||||||| || | |||| | |||||||| |||||||||| ||| |||||| |||||||||||| |
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| T |
4636257 |
ccaaaactctcgcaagacgcaaagagcagtagaaagaaagaaactacaaagataccgcctattagcgtaacat |
4636329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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