View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6948_low_9 (Length: 378)
Name: NF6948_low_9
Description: NF6948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6948_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 36 - 362
Target Start/End: Original strand, 33117949 - 33118272
Alignment:
| Q |
36 |
aattctttgttatcaagttcaatattcattttagttgttatgtagctcacattaaagtgactaaaatcaaaatgtttgacatattacatagatgatttc- |
134 |
Q |
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| T |
33117949 |
aattctttgtcatcaagttcaatattcattttagttgctatgtagctcacattaaagtgactaaaatcaatatgtttgacgtatcacagagatgatttca |
33118048 |
T |
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| Q |
135 |
aacatcaatttttattcatgaactaaaatcaaacgacaaagaccaaaattaaaatatgattgtaatgactagaaaaataattaaagtgactaaaaatgat |
234 |
Q |
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| T |
33118049 |
aacataaatttttattcatgaacaaaaatcaaacaataaagaccaaa---aaaatat-attgtaatcactagaagaataattaaa--aact-aaaatgat |
33118141 |
T |
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| Q |
235 |
atttgcatatctacagagagaaaagtttatttaaactc---aataataagttcattattcaacttaattatttcatgaaatttacatgtttggaccgtct |
331 |
Q |
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| T |
33118142 |
atttgcatatcaacagagagaaaattatatttaaactcaaaaataataagttcattattcaacttaattatttcatgaaatttacatgtttggaccgtct |
33118241 |
T |
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| Q |
332 |
atcactgaagttgtaaggaccgtgtgattta |
362 |
Q |
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| T |
33118242 |
atcgcttaagttgtaaggaccgtgtgattta |
33118272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33117895 - 33117931
Alignment:
| Q |
1 |
gttctgctcggtctgcattataggaagaatcacataa |
37 |
Q |
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| T |
33117895 |
gttctgctcggtctgcattataggaagaatcacataa |
33117931 |
T |
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