View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_high_11 (Length: 250)
Name: NF6949_high_11
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 34041171 - 34040952
Alignment:
| Q |
12 |
ttattctccacatatattgaaacaccaacccttcatgacttatgagtccaagtcaatcttcttatccaaatccacctcattttaaataacaaaagaactt |
111 |
Q |
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| T |
34041171 |
ttattctccacatatattgaaacaccaacccttcatgacttatgagtccaagtcaatcttcttatccaaatccacctcattttaaataacaaaagaactt |
34041072 |
T |
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| Q |
112 |
gtattgcaattaattacaatatatagaacttctgttcttaaacagtgannnnnnnnataataaacaagatcaaatatatgatcacgtattcatattatat |
211 |
Q |
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| T |
34041071 |
gtattgcaattaattacaatatatagaacttctgttcttaaacagtga-tttttttataataaacaagatcaaatatatgatcacgtattcatattatat |
34040973 |
T |
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| Q |
212 |
gagctgcttatcactcagatc |
232 |
Q |
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| T |
34040972 |
gagctgcttatcactcagatc |
34040952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 34042831 - 34042766
Alignment:
| Q |
38 |
aacccttcatgacttatgagtccaagtcaatcttcttatccaaatccacctcattttaaataacaa |
103 |
Q |
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| T |
34042831 |
aacccttcatggcttgcaagtccaagtcaatcttcttatctaaatccacctcattctaaataacaa |
34042766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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