View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_high_15 (Length: 201)
Name: NF6949_high_15
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 39837430 - 39837263
Alignment:
| Q |
20 |
taatagattgtaaaatgaacattaagctatatacatgtgagagactctcatggaaaaatgaatattaagctagctatatagaggaaaatcaagggacaaa |
119 |
Q |
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| T |
39837430 |
taatagatggaaaaatgaacattaagctatatacatgtgagagactctcatggaaaaatgaatattaagctagctatatagaggaaaatcaagggacaaa |
39837331 |
T |
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| Q |
120 |
tatgattaagctcaattctactaattatacactctgatctcatggaagacttgttaaacacttgtatg |
187 |
Q |
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| T |
39837330 |
tatgattaagctcaattctactaattatacactctgatctcatggaagacttgttaaatacttgtatg |
39837263 |
T |
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