View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_high_5 (Length: 434)
Name: NF6949_high_5
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_high_5 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Original strand, 66544 - 66948
Alignment:
| Q |
10 |
attattcttctaaaccttaaaaagccaagaaaagggtacataaaaaagtcctcacttctgttgatgaatataaaattcaaaacagctctcactttaacac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
66544 |
attattcttctaaaccttaaaaagccaagaaaagggtacataaaaaagtcctcacttctgttgatgaatataaaattcaaaacagctctcactttaacac |
66643 |
T |
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| Q |
110 |
ttgacattgacaacactgacgaatatgaagaaactttgagggaagagtgtgaatcggtggaaagttggcaagagaagagattgttagcgagatccagttt |
209 |
Q |
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| T |
66644 |
ttgacattgacaacactgacgaatatgaagaaactttgagggaagagtgtgaatcggtggaaagttggcaagagaagagattgttagcgagatccagttt |
66743 |
T |
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| Q |
210 |
tggataaatgcttccttgcaatatgaatatatataacttatacaaaatacaacacagataacacaacaaattataaaatcgtatttaatgtgaattcttc |
309 |
Q |
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| T |
66744 |
tggataaatgcttccttgcaatatgaatatatataacttatacaaaatacaacacagataacacaacaaattat-aaatcgtatttaatgtgaattcttc |
66842 |
T |
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| Q |
310 |
cgatgaagttatccccatgggatgtataggctgacatcactactagttagaaatgcaaaca-gttaaattacaaaactttcatatctgagactctcataa |
408 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
66843 |
cgatgaagttatccccatgggatgcataggctgacatcactactagttagaaatgcaaacaggttaaattacaaaactttcatatctgaga--ctcataa |
66940 |
T |
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| Q |
409 |
cccccaac |
416 |
Q |
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|||||||| |
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| T |
66941 |
cccccaac |
66948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 72809 - 72843
Alignment:
| Q |
80 |
taaaattcaaaacagctctcactttaacacttgac |
114 |
Q |
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| T |
72809 |
taaaattcaaagcagctctcactttaacacttgac |
72843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 21005466 - 21005545
Alignment:
| Q |
258 |
acaacacagataacacaacaaattataaaatcgtatttaatgtgaattcttccgatgaagttatccccatgggatgtatag |
338 |
Q |
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| T |
21005466 |
acaacacagataacacaacaaataataca-tcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatag |
21005545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 32007139 - 32007208
Alignment:
| Q |
143 |
ctttgagggaagagtgtgaatcggtggaaagttggcaagagaagagattgttagcgagatccagttttgg |
212 |
Q |
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| T |
32007139 |
ctttgagagaagagtgtgaatcggtggaaagttcggaagagaagagatcgttggggagattcatttttgg |
32007208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 31987159 - 31987190
Alignment:
| Q |
11 |
ttattcttctaaaccttaaaaagccaagaaaa |
42 |
Q |
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| T |
31987159 |
ttattcttctaaaccttaaaaagccaagaaaa |
31987190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 32002217 - 32002264
Alignment:
| Q |
143 |
ctttgagggaagagtgtgaatcggtggaaagttggcaagagaagagat |
190 |
Q |
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| T |
32002217 |
ctttgagagaagagtgtgactcggtggaaagtttggaagagaagagat |
32002264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 21005395 - 21005450
Alignment:
| Q |
198 |
gagatccagttttggataaatgcttccttgcaatatgaatatatataacttatacaaaat |
257 |
Q |
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| T |
21005395 |
gagatccatttttggataaatgcttcctttcaatacga----atataacttatacaaaat |
21005450 |
T |
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