View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_high_8 (Length: 326)
Name: NF6949_high_8
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 32054391 - 32054686
Alignment:
| Q |
1 |
agtgcatcaccttcttcccaacattctttttataatcggttaaaattcacatagatttcatcaatttaagaacaagtcgcatgacatggaagatgatcat |
100 |
Q |
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| T |
32054391 |
agtgcgtcaccttcttcccaacattctttttataatcggttaaaattcacatagatttcgtcaatttgagaacgagtcgcatgacatggaagatgatcgt |
32054490 |
T |
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| Q |
101 |
ataaattagagaaactcatatataatatttatgtgttgtgggttaaaataaaagctacaatttatagtttctattaaatcacggtccatcaacgtatgaa |
200 |
Q |
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|||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
32054491 |
ataaattagagaaactcatatatataatatat--------------aataaaagctacaatttatagcttctattaaatcacggtccatcaaagtatgaa |
32054576 |
T |
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| Q |
201 |
agggaaaccaaacatatagataattgtttcaaccaatttaacaaaaagagaattggaaagagagcatgagataggttgttgacgtaccaaacatctagtg |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32054577 |
agggaaaccaaacatatagataattatttcaaccaatttaacaaaaagagaattggaaagagagcatgagataggttgttgacgtaccaaacatctagtg |
32054676 |
T |
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