View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_low_10 (Length: 288)
Name: NF6949_low_10
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 11403787 - 11403955
Alignment:
| Q |
1 |
acaaagagggtaggaagaaaggatggggcatccaatgctcaaaagtcagtagttggagtcaaaatatttaattgtacacttatcttatttaagag--aga |
98 |
Q |
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| T |
11403787 |
acaaagagggtagaaagaaaggatggggcatccaatgctcaaaagtcagtagttggagtcaaaatatttaattgtacacttatcttatttaagagaaaga |
11403886 |
T |
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| Q |
99 |
atgtgaacatgattttaatttaacttaactgtgaaattattttacccctacatcaaattcttaggtcaat |
168 |
Q |
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| T |
11403887 |
atgtgaacatgattttaatttaacttaactgggaaattatttta-ccctacatcaaattcttaggtcaat |
11403955 |
T |
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Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 153 - 281
Target Start/End: Original strand, 11404150 - 11404278
Alignment:
| Q |
153 |
aaattcttaggtcaatccctatgtaacgtggactatatttccaaagaatttgcacttaatatatgaaaatatggtaaattatacttttctccctttcaag |
252 |
Q |
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| T |
11404150 |
aaattcttaggtcaatccctatgtaacgtggactatatttccaaagaatttgcacttaatatatgaaaatatggtaaattatacttttcttcctttcaag |
11404249 |
T |
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| Q |
253 |
tttttcctctagtttttaactaacaccaa |
281 |
Q |
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| T |
11404250 |
ttttttatctagtatttaactaacaccaa |
11404278 |
T |
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