View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_low_11 (Length: 280)
Name: NF6949_low_11
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 13768469 - 13768305
Alignment:
| Q |
14 |
ttttgctataatattgggttaatttatgcggtaaatcgcatattttcttgtgatttgctgttttattttgacaaggaaaaaacaaataggaacaagaata |
113 |
Q |
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| T |
13768469 |
ttttgctatattattgggttaatttatgcgataaatcgcatattttcttgtgatttgctgttttattttgacaaggaaaaaacaaataggaacaagaata |
13768370 |
T |
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| Q |
114 |
acacaaatataaatttatgggataccgttgctatctttaagatttgacatataaataaactaaat |
178 |
Q |
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| T |
13768369 |
acacaaatataaatttatgggataccgttgctacctttaagatttgacatataaataaattaaat |
13768305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 13767503 - 13767421
Alignment:
| Q |
187 |
catatagtttaagggagggaatcttcaattattgtgtggttatgtttaattcatttctatgattcatgatttagtttttctct |
269 |
Q |
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| T |
13767503 |
catatagtttaagggagggaatcttaaattattttgtggttatgtttaattcatttctatgattcatgatttagtttttctct |
13767421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 14655662 - 14655629
Alignment:
| Q |
213 |
aattattgtgtggttatgtttaattcatttctat |
246 |
Q |
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| T |
14655662 |
aattattgtgtggttatgtttaatttatttctat |
14655629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 11851478 - 11851558
Alignment:
| Q |
166 |
aaataaactaaatgcgttccacatatagtttaagggagggaatcttcaattattgtgtggttatgtttaattcatttctat |
246 |
Q |
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| T |
11851478 |
aaataaactaaatgcattttgcatatagtttaagggagggaatgttagattattttgtggttatatttaatctatttctat |
11851558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 5878174 - 5878254
Alignment:
| Q |
166 |
aaataaactaaatgcgttccacatatagtttaagggagggaatcttcaattattgtgtggttatgtttaattcatttctat |
246 |
Q |
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| T |
5878174 |
aaataaactaaatgcattttgcatatagtttaagggagggaatgttagattatgttgtggttatatttaatctatttctat |
5878254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 2774540 - 2774612
Alignment:
| Q |
166 |
aaataaactaaatgcgttccacatatagtttaag-ggagggaatcttcaattattgtgtggttatgtttaatt |
237 |
Q |
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| T |
2774540 |
aaataaactaaatgtattatgcatatagtttaaatggagggaatgttaaattattgtgtggttatgtttaatt |
2774612 |
T |
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