View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_low_14 (Length: 248)
Name: NF6949_low_14
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 34916870 - 34917090
Alignment:
| Q |
10 |
aacaaagagaagacaatactccaaaagaaagggtagatcaaagtaccctaaaggaactcttctacaaaaatatatcaagagcttaaacctagacgaaaac |
109 |
Q |
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| T |
34916870 |
aacaaagagaagacaatactccaaaagaaagggtagatcaaagtaccctaaaggaactcttctacaaaaatatatcaagagcttaaacctagacgaaaat |
34916969 |
T |
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| Q |
110 |
cctccgaaagattatagaagaaaaccttcagctaatgctataaagaacaaaaccaacagaagcacaacaatatcctctcagtctcaacaaactgaacaat |
209 |
Q |
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| T |
34916970 |
cctccgaaagattatagaagaaaaccttcagctaatgctataaaaaacaaaaccaacagaagcacaacaatatcctctcagtctcaacaaactgaacaat |
34917069 |
T |
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| Q |
210 |
tttttcccaatgatcagtgtt |
230 |
Q |
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||||||||||||||||||||| |
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| T |
34917070 |
tttttcccaatgatcagtgtt |
34917090 |
T |
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Back To:
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 21549574 - 21549495
Alignment:
| Q |
65 |
actcttctacaaaaatatatcaagagcttaaacctagacgaaaaccctccgaaagattatagaagaaaaccttcagctaa |
144 |
Q |
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| T |
21549574 |
actcttctacaagaatatatcaagagcttgaacttagacaaaaatcccccaaaagagtatacaagaaaatcttcaactaa |
21549495 |
T |
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