View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_low_15 (Length: 241)
Name: NF6949_low_15
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 11403523 - 11403741
Alignment:
| Q |
18 |
aaatatgcataggatcctacttaattagcttcagttatgatcaaaattttgagcacatcatttcctttttctannnnnnnncaaggtgtactcatctata |
117 |
Q |
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| T |
11403523 |
aaatatgcgtaggatcctactta----gctttacttatgatcaaaattttgagcacag-atttcctttttctattttttttcaaggtgtactcatctata |
11403617 |
T |
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| Q |
118 |
taggctgtacaatatacattttttaagatgattttacttcctatgttagcatatcgaaccatttttctttgttaaatagaatcatctttcccacagcata |
217 |
Q |
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| T |
11403618 |
taggctgtacaatatacattttttaagatgattttacttcctatgttagcatatcgaaccatttttctttgttaaatagaatcatctttcccacagcata |
11403717 |
T |
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| Q |
218 |
catagtgcagtacaagttgctttt |
241 |
Q |
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| T |
11403718 |
catggtgcagtacaacttgctttt |
11403741 |
T |
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