View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_low_16 (Length: 231)
Name: NF6949_low_16
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 1161330 - 1161523
Alignment:
| Q |
24 |
gcatcttgtatacttagatactcatcttatatatgcccggttgagttgaatgaataatgttgtacatcgatttgttcagtatccttttcattattttaac |
123 |
Q |
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| T |
1161330 |
gcatcttgtatacttagatactcatcttatatatgcccggttgagttgaatgaataatgttgtacatcgatttgttcagtatccttttcattattttaac |
1161429 |
T |
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| Q |
124 |
agcaagacctgcaggtcatactattattagtcttgtgattcttctctttgcagaacttaaaatggttagtgtagcaagcaactgtttgatgtcc |
217 |
Q |
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| T |
1161430 |
agcaagacctacaggtcatactattattagtcttgtgattcttctctttgcagaacttaaaatggtaagtgtagcaagcaactgttcgatgtcc |
1161523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 59 - 214
Target Start/End: Complemental strand, 879883 - 879715
Alignment:
| Q |
59 |
cccggttgagttgaatgaataatgttgtacatcgatttgttca---------------gtatccttttcattattttaacagcaagacctgcaggtcata |
143 |
Q |
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| T |
879883 |
cccggttgagttgaatgaataatgttgtacatcgactagttcagaggttagaccgagtgtatccttttcattattataacagcaagac---caggtcata |
879787 |
T |
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| Q |
144 |
ctatta-ttagtcttgtgattcttctctttgcagaacttaaaatggttagtgtagcaagcaactgtttgatg |
214 |
Q |
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| T |
879786 |
ctattatttagtcttgtgattcttctctttgcagaacttaaaatggtaaatgtagcaagcaagtgttcgatg |
879715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 879973 - 879941
Alignment:
| Q |
24 |
gcatcttgtatacttagatactcatcttatata |
56 |
Q |
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| T |
879973 |
gcatcttgtatacttaggtactcatcttatata |
879941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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