View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_low_17 (Length: 207)
Name: NF6949_low_17
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_low_17 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 15842540 - 15842634
Alignment:
| Q |
18 |
ataaattgggtgaggtggagtttggtttgtaaaccaaaagaggaaggtggtttaggggtgagggatgtgagagtggttaacttgagcttactagc |
112 |
Q |
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| T |
15842540 |
ataaattgggtgaggtgtagtttggtttgtaaaccaaaagaggaaggtggtttaggggtgagggatgttagagtggttaacttgagcttgctagc |
15842634 |
T |
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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 15857566 - 15857652
Alignment:
| Q |
107 |
actagcaaaatgaaaatggaggcttatccaagatagcaatgctctttggaaggatgtgttggtagagaaatatggtacttcgtgtgt |
193 |
Q |
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| T |
15857566 |
actagcaaaatggaaatggaggcttatccaagataggaatgctctttggaaggatgtgttggtagagaaatatggtacttcatgtgt |
15857652 |
T |
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Target: scaffold0272 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 1512 - 1662
Alignment:
| Q |
24 |
tgggtgaggtggagtttggtttgtaaaccaaaagaggaaggtggtttaggggtgagggatgtgagagtggttaacttgagcttactagcaaaatgaaaat |
123 |
Q |
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| T |
1512 |
tgggttaggtggagtttggtttgtaaaccaaaagaggaaggtagtttgggggtgagggatgttagagcggttaatttgagccttctagcaaagtggaaat |
1611 |
T |
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| Q |
124 |
ggaggcttatccaagatagcaatgctctttggaaggatgtgttggtagaga |
174 |
Q |
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| T |
1612 |
ggaggttgatccaagataggaatgccctctagaaggacgtgttggtggaga |
1662 |
T |
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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 20702978 - 20702813
Alignment:
| Q |
18 |
ataaattgggtgaggtggagtttggtttgtaaaccaaaagaggaaggtggtttaggggtgagggatgtgagagtggttaacttgagcttactagcaaaat |
117 |
Q |
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| T |
20702978 |
ataaattgagtgaggtggagtttagtgtgtaaaccaaaagaggaaggtggtttaggggtgagggacgttagggtggtcaatttgagtttactagcgaagt |
20702879 |
T |
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| Q |
118 |
gaaaatggaggcttatccaagatagcaatgctctttggaaggatgtgttggtagagaaatatggta |
183 |
Q |
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| T |
20702878 |
ggagatggagattgatttatgatggaaatgccctttggaaggaggtgttgatagcaaaatatggta |
20702813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 21943201 - 21943038
Alignment:
| Q |
18 |
ataaattgggtgaggtggagtttggtttgtaaaccaaaagaggaaggtggtttaggggtgagggatgtgagagtggttaacttgagcttactagcaaaat |
117 |
Q |
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| T |
21943201 |
ataaattgagtgaagtggagtgtggtttgcaaaccaaaggaggagggtggtttgggggtgagggatgtgagggtggttaattggagtttgcttgcgaagt |
21943102 |
T |
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| Q |
118 |
gaaaatggaggcttatccaagatagcaatgctctttggaaggatgtgttggtagagaaatatgg |
181 |
Q |
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| T |
21943101 |
ggagatggagattaattcaagagggcaatgtgctttggaaggatgtattggtggagaagtatgg |
21943038 |
T |
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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 27752826 - 27752986
Alignment:
| Q |
21 |
aattgggtgaggtggagtttggtttgtaaaccaaaagaggaaggtggtttaggggtgagggatgtgagagtggttaacttgagcttactagcaaaatgaa |
120 |
Q |
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| T |
27752826 |
aattgggtgaagtggagtgtggtttgtacaccaaaggaggagggtggtttgggggtgagagatgttagggtggttaattggagtttacttgcgaagtgga |
27752925 |
T |
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| Q |
121 |
aatggaggcttatccaagatagcaatgctctttggaaggatgtgttggtagagaaatatgg |
181 |
Q |
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| T |
27752926 |
aatggagactaattcaagatgggcatgcgctttggaaagatgtgttggttgagaaatatgg |
27752986 |
T |
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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 31401351 - 31401424
Alignment:
| Q |
21 |
aattgggtgaggtggagtttggtttgtaaaccaaaagaggaaggtggtttaggggtgagggatgtgagagtggt |
94 |
Q |
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| T |
31401351 |
aattgggtgagatggagtttggtttgaaaaccaaataaggatggtggtttgggggtgcgggatgttagagtggt |
31401424 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 10238494 - 10238579
Alignment:
| Q |
17 |
aataaattgggtgaggtggagtttggtttgtaaaccaaaaga-ggaaggtggtttaggggtgagggatgtgagagtggttaacttgag |
103 |
Q |
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| T |
10238494 |
aataaattgggaga--tggagtttggtttgtaagccaaaaaaaggatggtggtttaggggtgcgggatgtgagagcggtaaacttgag |
10238579 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 29351504 - 29351464
Alignment:
| Q |
63 |
ggtggtttaggggtgagggatgtgagagtggttaacttgag |
103 |
Q |
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| T |
29351504 |
ggtggtttgggggtgagggatgtgagagcggtcaacttgag |
29351464 |
T |
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