View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_low_4 (Length: 492)
Name: NF6949_low_4
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 43451234 - 43451701
Alignment:
| Q |
18 |
aaaaccgatgaggactgaattttctatgcttgctgttttagttttttagtgctaagtgatgaatatgtcctgtaggaaaaagacaaaaatgtagcattgt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43451234 |
aaaaccaatgaggactgaattttctatgcttgctgttttagttttttagtgctaagtgatgaatatgtcctgtaggaaaaagacaaaaatgtagcattgt |
43451333 |
T |
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| Q |
118 |
tggagcctcgacaaagccaaagccaaaacaaggaacaaattcaaaccatcttcaaagaatccagggggtacgtatattaaaaaaccattcttcaatattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43451334 |
tggagcctcgacaaagccaaagccaaaacaaggaacaaattcaaaccatcttcaaagaatccagggggtacgtatattaaaaaaccattcttcaatattt |
43451433 |
T |
|
| Q |
218 |
tgttgtctgatacattttctttaacttggattcttcctgctcctagctccccagattatccaatggcagactatgaaaacacgccgccacatggaagtgg |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43451434 |
tgttgtctgatgcattttctttaacttggattcttcctgctcctagctccccagattatccaatggcagactatgaaaacacgccgccacatggaagtgg |
43451533 |
T |
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| Q |
318 |
gaaacaaacacctcctaaagacttcgtctgtccaataaccagtaacatatttgatgatccagtgactcttgagactggtcagacatatgaacgtaaagct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43451534 |
gaaacaaacacctcctaaagacttcgtctgtccaataaccagtaacatatttgatgatccagtgactcttgagactggtcagacatatgaacgtaaagct |
43451633 |
T |
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| Q |
418 |
attgaggaatggtttaatagagagaacataacttgtcctatcactcgccagaagctacaaaacaccaa |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43451634 |
attgaggaatggtttaatagagagaacataacttgtcctatcactcgccagaagctacaaaacaccaa |
43451701 |
T |
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