View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_low_5 (Length: 479)
Name: NF6949_low_5
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 7 - 466
Target Start/End: Complemental strand, 11663769 - 11663312
Alignment:
| Q |
7 |
tctaatgggtggatgctttgactttctcacactattgaaatttttgcagagtttgtgataccagcagggtggaaggttcttcctgtcttgtcagcatcac |
106 |
Q |
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| T |
11663769 |
tctaatgggtggatgctttgactttctcacactattgaaatttttgcagagtttgtgataccagcagggtggaaggttcttcctgtcttgtcagcatcac |
11663670 |
T |
|
| Q |
107 |
atttggatcctaaccttttggaaaatccattagaattcaatccctatcgatggaatgtatgttgcaatgcctttatacaaaccctagatataaagagtaa |
206 |
Q |
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| T |
11663669 |
atttggatcctaaccttttggaaaatccattagaattcaatccctatcgatggaatgtatgttgcaatgcctttatacaaaccctagatataaagagtaa |
11663570 |
T |
|
| Q |
207 |
aagtttcatagcatattcttttgttcattattctattgcaaatctaatctaattttgtctctcttaggatgaaaattcgaccaggaagaaagttgcacca |
306 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11663569 |
aagtttcatagcat--tcttttgttcattattctattgcaaatctaatctaattttgtctctcttaggatgaaaattcgaccagcaagaaagttgcacca |
11663472 |
T |
|
| Q |
307 |
tttggtggtggtccacgtctatgtcctggtgctgatcttgctaaagtgggaatagcattcttccttcatcatcttgtccttaattataggtacttacctt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11663471 |
tttggtggtggtccacgtctatgtcctggtgctgatcttgctaaagtggaaatagcattcttccttcatcatcttgtccttaattataggtacttacctt |
11663372 |
T |
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| Q |
407 |
acaacactaactataaattaggtaatacgtattaagataaatcagtagtacaaatgatgt |
466 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11663371 |
acaacactagctataaattaggtaatacgtattaagataaattagtagtacaaatgatgt |
11663312 |
T |
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