View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6949_low_7 (Length: 380)
Name: NF6949_low_7
Description: NF6949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6949_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 1161846 - 1161483
Alignment:
| Q |
17 |
tgcaatatggggaagaaggaaagcataagctccattggtgtcgtttccaatttcatgtcgacaacaaagaaattatgtgtgtagccgcagacgtagagtg |
116 |
Q |
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| T |
1161846 |
tgcaatatggggaagaaggaaagcataagctccattggtgtcgtttccaatttcatgtcgacaacaaagaaattatgtgtgtagccgcagacatagagtg |
1161747 |
T |
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| Q |
117 |
agtgagaaaggaaccatccatgtgctatgcaatgcacataaccaagttagctacagcatggtcttcaacacatacacatagcagcaaaacattccctcgg |
216 |
Q |
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| T |
1161746 |
agtgagaaaggaaccatccatgtgctatgcaatgcacataaccaagtcagctacagcatggtcttcaacacatacacatagcagcaaaacattccctcgg |
1161647 |
T |
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| Q |
217 |
ctaactaagcttaagaacagttaattacaaagacctgatcttgaagtttaaataaatcattattcacaaggatccctcttcacacaagtccaaccctgaa |
316 |
Q |
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| T |
1161646 |
ctaactaagcttaagaacagttaattacaaagacctgatcttgaagtttaaataaatcattattcacaaggatccctcttcacacaagtccaaccctgaa |
1161547 |
T |
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| Q |
317 |
tgattgttaacttaacaatggccggacatcgaacagttgcttgctaacctacccattttaagtt |
380 |
Q |
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| T |
1161546 |
tgattgttaacttaacaatggccggacatcgaacagttgcttgctacacttaccattttaagtt |
1161483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 37 - 362
Target Start/End: Original strand, 879403 - 879734
Alignment:
| Q |
37 |
aagcataagctccattggtgtcgtttccaatttcatgtcgacaacaaagaaattatgtgtgtagccgcag-acgtagagtgagtgagaaaggaaccatcc |
135 |
Q |
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| T |
879403 |
aagcataaacaccattggtgccgttcgtaatttcatatcgacaaccaagaaattacgtgtgtagtcgcaggacgtagaatgagtgagaaaggaagcatc- |
879501 |
T |
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| Q |
136 |
atgtgctatgcaatgcacataaccaagttagctac-------agcatggtcttcaacacatacacatagcagcaaaacattccctcggctaactaagctt |
228 |
Q |
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| T |
879502 |
atgtgctatgcaatgcacataaccaattcagctaccataagcagcatgatcttcaacacatacacatagcagcaaaatattccctctgctaataaagctt |
879601 |
T |
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| Q |
229 |
aagaacagttaattacaaagacctgatcttgaagtttaaataaatcattattcacaaggatccctcttcacacaagtccaaccctgaatgattgttaact |
328 |
Q |
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| T |
879602 |
tggaacagttaattacaaagacctgatcttgaagtttaaataaatcattatttacaaggatccctcttcacac-ggtccaaccctgaatgtttgttaact |
879700 |
T |
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| Q |
329 |
taacaatggccggacatcgaacagttgcttgcta |
362 |
Q |
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| T |
879701 |
taacaatggccggccatcgaacacttgcttgcta |
879734 |
T |
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