View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6950_high_1 (Length: 519)
Name: NF6950_high_1
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 45888621 - 45888308
Alignment:
| Q |
18 |
aattcctggatcagagtctgctgaatatcccacagggtttatggtacaagtatactgggagcaagatgacactggcgctctttgcatcgttggccactcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45888621 |
aattcctggatcagagtctgctgaatatcccacagggtttatggtacaagtacactgggagcaagatgacactggcgctctttgcatcgctggccactcg |
45888522 |
T |
|
| Q |
118 |
cagaaagctcctcttcctcaaaagatccaactaccatcgtctcctactgcaagacaacgccggtcagcgtcagtccacggggttgtgattgatccaagtc |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45888521 |
cagaaagctcctgttcctcaaaagatccaactaccatcgtctcctactgcaagacaacgccggtcagcgttagtccacggggttgtgattgatccaagtc |
45888422 |
T |
|
| Q |
218 |
aagttagtttagtcaattttcagtaatgtattgatactttacctaaatattccttttggttataagatttcatttttatatgtgttgtcatttggtaact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45888421 |
aagttagtttagtcaattttcagtaatgtattgata-tttacttaaatattccttttggttataagatttcatttgtatatgtgttgtcatttggtaact |
45888323 |
T |
|
| Q |
318 |
tgttagacaattaag |
332 |
Q |
| |
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||||||||||||||| |
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| T |
45888322 |
tgttagacaattaag |
45888308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 404 - 510
Target Start/End: Complemental strand, 45888236 - 45888130
Alignment:
| Q |
404 |
gttgtgatattcaattcaagggggaaaattcaatgcattgtatcgcccagccaaacagacatttgtaaggttataaaaaagaattaacaatgtaatacta |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
45888236 |
gttgtgatattcaattcaagggggaaaattcaatgcattgtatcgcccagccaaacagacatttgcaaggttataaaaaagaattaacaatatagtacta |
45888137 |
T |
|
| Q |
504 |
gtattat |
510 |
Q |
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||||||| |
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| T |
45888136 |
gtattat |
45888130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 12985687 - 12985903
Alignment:
| Q |
20 |
ttcctggatcagagtctgctgaatatcccacagggtttatggtacaagtatactgggagcaagatgacactggcgctctttgcatcgttggccactcgca |
119 |
Q |
| |
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|||| |||||||||||| ||||||| |||||||| ||||||||| |||| | ||||||||||||||||| || | ||||| | | |||||||| || |
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| T |
12985687 |
ttcccggatcagagtctactgaataccccacaggttttatggtagaagtgcattgggagcaagatgacaccggtaccctttgtgttgccggccactccca |
12985786 |
T |
|
| Q |
120 |
gaaagctcctcttcctcaaaagatccaactaccatcgtctcctactgcaagacaacgccggtcagcgtcagtccacggggttgtgattgatccaagtcaa |
219 |
Q |
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|||||||||| |||||||||| |||||||||||||| | |||||||||||||||||||||||| |||||| || || |||||||||||||||| |||| |
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| T |
12985787 |
gaaagctcctattcctcaaaatatccaactaccatc---tgctactgcaagacaacgccggtcagggtcagttcatggagttgtgattgatccaaatcaa |
12985883 |
T |
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| Q |
220 |
gttagtttagtcaattttca |
239 |
Q |
| |
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||||||| || || |||||| |
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| T |
12985884 |
gttagttcagacagttttca |
12985903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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