View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6950_high_18 (Length: 239)
Name: NF6950_high_18
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 27877854 - 27878090
Alignment:
| Q |
3 |
acattccttccagctacttcaacagcatcacataccctatctacgcatcatatataagaatcagaaaaataaataaactaatacatacacataacagcca |
102 |
Q |
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| T |
27877854 |
acattccttccagctacttcaacagcatcacataccctatctacacatcatatataagaatcagaaaaataaataaaccaatacatacacatgactgcca |
27877953 |
T |
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| Q |
103 |
agaacaataaataagcacttattaagtaacttactgaatccatcaagagaagcaagtagaacttctccaggaagaaagctaaaaaacttcttccctggtt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27877954 |
agaacaataaataagcacttattaagtaacttactgaatccatcaagagaagcaagtagaacttctccaggaagaaagctaaaaaacttcttccctggtt |
27878053 |
T |
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| Q |
203 |
tagagttcaccactgaactagtaaggaatccagacac |
239 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
27878054 |
tagagttcaccactgaactagtaaggaatccagacac |
27878090 |
T |
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