View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6950_high_22 (Length: 201)
Name: NF6950_high_22
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 28970190 - 28970351
Alignment:
| Q |
21 |
accgttgactttggaaggaaaatatttgaaataacacaccataaaggcaataaatctcctgaatgagtaacaaaaacatgactcataatgatactaccca |
120 |
Q |
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| T |
28970190 |
accgctgactttggaaggaaaatatttgaaataacacaccataaaggcaataaatctcctgaatgagtaacaaaaacatgactcataatgatactaccca |
28970289 |
T |
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| Q |
121 |
aaatctctaaagatcttgtaacaaataccaaaatttctaatgacacagccacgtttgaccca |
182 |
Q |
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||||||||||||||||||||||||||||||| | |||| |||||||| |||||||||||||| |
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| T |
28970290 |
aaatctctaaagatcttgtaacaaataccaacaattctgatgacacatccacgtttgaccca |
28970351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 28968099 - 28967941
Alignment:
| Q |
24 |
gttgactttggaaggaaaatatttgaaataacacaccataaaggcaataaatctcctgaatgagtaacaaaaacatgactcataatgatactacccaaaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| |
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| T |
28968099 |
gttgactttggaaggaaaatatttgaaataacacaccaaaagggcaataaatctcctgcaggagtaacaaaaacatgacacataatgatactacccaaaa |
28968000 |
T |
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| Q |
124 |
tctctaaagatcttgtaacaaataccaaaatttctaatgacacagccacgtttgaccca |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28967999 |
tctctaaagatcttgtaacaaataccaaaatttctaatgacacagccacgtttgaccca |
28967941 |
T |
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