View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6950_low_10 (Length: 264)
Name: NF6950_low_10
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 27878300 - 27878544
Alignment:
| Q |
1 |
gcaacctcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccacaccacaaaattcctctgatcatttgtcctgaacctgcagc |
100 |
Q |
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| T |
27878300 |
gcaacctcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccgcaccacaaaattcctctgatcatttgtcctgaacctgcagc |
27878399 |
T |
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| Q |
101 |
aatccatctaccaaatcttccactataatcctccacgtttggtgccaacgttgtccaataagcagcagcagaattttcctctacatcttcctttttctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27878400 |
aatccatctaccaaatcttccactataatcctccacgtttggtgccaacgttgtccaataagcagcagcagaattttcctctacatcttcctttttctcc |
27878499 |
T |
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| Q |
201 |
aaaacctcccaccctttaacacccttcaccttctcaacagaaaga |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27878500 |
aaaacctcccaccctttaacacccttcaccttctcaacagaaaga |
27878544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 31870186 - 31870249
Alignment:
| Q |
7 |
tcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccacaccacaaaat |
70 |
Q |
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|||||||||| | |||| |||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
31870186 |
tcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaat |
31870249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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