View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6950_low_12 (Length: 252)
Name: NF6950_low_12
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39702980 - 39702742
Alignment:
| Q |
1 |
ctaaagaccaacccaaattatcttcaatgtaaataactccagttaatgcagctccagaagcaacatagaaagtgaaaaagaaccagttgaaaaatgttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39702980 |
ctaaagaccaacccaaattatcttcaatgtaaataactccagttaatgcagctccagaagcaacatagaaagtgaaaaagaaccagttgaaaaatgttcc |
39702881 |
T |
|
| Q |
101 |
ttgatcttcaagtttgtcaaactgatttgcacctagtgatgctgctgtgaaacgtgaaccaccaaaaccaattgatattaggactatgcttatgtataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39702880 |
ttgatcttcaagtttgtcaaactgatttgcacctagtgatgctgctgtgaaacgtgaaccaccaaaaccaattgatattaggactatgcttatgtataaa |
39702781 |
T |
|
| Q |
201 |
actgtatattggattcctgttggtggtatgcatgtgatg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39702780 |
actgtatattggattcctgttggtggtatgcatgtgatg |
39702742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 39930326 - 39930553
Alignment:
| Q |
8 |
ccaacccaaattatcttcaatgtaaataactccagttaatgcagctccagaagcaacatagaaagtgaaaaagaaccagttgaaaaatgttccttgatct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| | |
|
|
| T |
39930326 |
ccaacccaaattatcttcaatgtaaataattccagttaatgcagctcctgaagcaacatagaaagtgaagaagtaccagttgaaaaatgttccttgatgt |
39930425 |
T |
|
| Q |
108 |
tcaagtttgtcaaactgatttgcacctagtgatgctgctgtgaaacgtgaaccaccaaaaccaattgatattaggactatgcttatgtataaaactgtat |
207 |
Q |
| |
|
|| |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| | |
|
|
| T |
39930426 |
tctggtttgtcaaattgatttgcacctaatgatgctgctgtgaaacgcgaaccaccaaaaccaattgatattaataatatgcttatgtataaaactgtgt |
39930525 |
T |
|
| Q |
208 |
attggattcctgttggtggtatgcatgt |
235 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
39930526 |
attggattcctgttggtggtttgcatgt |
39930553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 39693000 - 39692770
Alignment:
| Q |
8 |
ccaacccaaattatcttcaatgtaaataactccagttaatgcagctccagaagcaacatagaaagtgaaaaagaaccagttgaaaaatgttccttgatct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| |||| | |
|
|
| T |
39693000 |
ccaacccaaattatcttcaatgtaaataattccagttaatgcagctcctgaagcaacatagaaagcgaaaaagaaccagttgaaaaatattccctgatgt |
39692901 |
T |
|
| Q |
108 |
tcaagtttgtcaaactgatttgcacctagtgatgctgctgtgaaacgtgaaccaccaaaaccaattgatattaggactatgcttatgtataaaactgtat |
207 |
Q |
| |
|
|| |||||| ||| ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39692900 |
tctggtttgttaaattgattggctcctagtgatgctgctgtgtaacgtgaaccaccaaaaccaattgatattaacactatgcttatgtataaaactgtat |
39692801 |
T |
|
| Q |
208 |
attggattcctgttggtggtatgcatgtgat |
238 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
|
|
| T |
39692800 |
attggattcctgttggtggtttgcatgtgat |
39692770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 39935021 - 39935099
Alignment:
| Q |
161 |
accaaaaccaattgatattaggactatgcttatgtataaaactgtatattggattcctgttggtggtatgcatgtgatg |
239 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
39935021 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatg |
39935099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University