View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6950_low_14 (Length: 249)
Name: NF6950_low_14
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_low_14 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51807693 - 51807462
Alignment:
| Q |
1 |
actatcagccttcctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactctatatatgttggtaaaaccatcaatacttagcga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51807693 |
actatcagccttcctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactctat----gttggtaaaaccatcaatacttagcga |
51807598 |
T |
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| Q |
101 |
aatttgatattcatgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaaccaag |
200 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807597 |
aatttgatattcatgattcatctgtc---aaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaaccaag |
51807501 |
T |
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| Q |
201 |
taagtatctgttaatcgaattttgaaactgatgatatat |
239 |
Q |
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| T |
51807500 |
taagtatctgttaatcgaattttgaaactgatgatatat |
51807462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 51779997 - 51779766
Alignment:
| Q |
1 |
actatcagccttcc----tagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactctatatatgttggtaaaaccatcaatactta |
96 |
Q |
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|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |
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| T |
51779997 |
actatcagccttcctagctagcaagccttttcttgtttgaatttgttaaacctgaaacaataaagcactctata----ttggtaaaacattcaataccta |
51779902 |
T |
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| Q |
97 |
gcgaaatttgatattcatgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaac |
196 |
Q |
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| T |
51779901 |
gcgaaattagatgttcatgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgtttggatggatattgacattgatgagaggcagaat |
51779802 |
T |
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| Q |
197 |
caagtaagtatctgttaatcgaattttgaaactgat |
232 |
Q |
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|||||| ||||||||| |||||| |||||||||||| |
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| T |
51779801 |
caagtatgtatctgtttatcgaactttgaaactgat |
51779766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 51772112 - 51771893
Alignment:
| Q |
1 |
actatcagccttcctagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaa--gcactctatatatgttggtaaaaccatcaatacttagc |
98 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | | |
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| T |
51772112 |
actatcagcctttctagcaagccttttcttgttcgaatttgttaaacctgaaacaataaaaagcactctatat----tggtaaaaccatcaatacagatc |
51772017 |
T |
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| Q |
99 |
gaaatttgatattcatgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaacca |
198 |
Q |
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|| | |||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| || |
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| T |
51772016 |
ga-------ttttcatgattcgtctgta---aaggaaatgaaagtcttacttttgctttgatgtttggatggatattgacattgatgagaggtagaatca |
51771927 |
T |
|
| Q |
199 |
agtaagtatctgttaatcgaattttgaaactgat |
232 |
Q |
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|||||||||||||||| |||||||| ||||||| |
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| T |
51771926 |
agtaagtatctgttaacggaattttggaactgat |
51771893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 51803689 - 51803593
Alignment:
| Q |
131 |
aggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaaccaagtaagtatctgttaatcgaattttgaaa |
227 |
Q |
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||||||| ||||| ||||||||| |||| || |||| || | ||| |||||||||| ||||||| |||||||||||||||||| || |||||||| |
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| T |
51803689 |
aggaaaataaagttttacttttgttttgttgtttggttgaaagttgacattgatgagtggcagaatcaagtaagtatctgttaactgatttttgaaa |
51803593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 6639 - 6408
Alignment:
| Q |
1 |
actatcagccttcc----tagcaagtcttttcttgttcgaatttgttaaacctgaaacaataaagcactctatatatgttggtaaaaccatcaatactta |
96 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |
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| T |
6639 |
actatcagccttcctagctagcaagccttttcttgtttgaatttgttaaacctgaaacaataaagcactctata----ttggtaaaacattcaataccta |
6544 |
T |
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| Q |
97 |
gcgaaatttgatattcatgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgcttggatggatattggcattgatgagaggcagaac |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
6543 |
gcgaaatttgatattcatgattcgtctgtcgtcaaggaaaagaaagtcttacttttgctttgatgtttggatggatattgacattgatgagaggcagaat |
6444 |
T |
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| Q |
197 |
caagtaagtatctgttaatcgaattttgaaactgat |
232 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
6443 |
caagtatgtatctgttaatcgaattttgaaactgat |
6408 |
T |
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