View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6950_low_17 (Length: 241)

Name: NF6950_low_17
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6950_low_17
NF6950_low_17
[»] chr3 (2 HSPs)
chr3 (12-228)||(32368048-32368263)
chr3 (12-225)||(8124570-8124783)
[»] chr1 (1 HSPs)
chr1 (12-227)||(4958083-4958298)
[»] chr2 (1 HSPs)
chr2 (12-227)||(12371085-12371292)
[»] chr8 (2 HSPs)
chr8 (12-227)||(18194435-18194650)
chr8 (78-167)||(1183271-1183360)
[»] chr4 (1 HSPs)
chr4 (12-227)||(26078591-26078804)
[»] chr7 (3 HSPs)
chr7 (95-228)||(5243469-5243602)
chr7 (21-89)||(5246972-5247040)
chr7 (82-167)||(35898326-35898411)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 32368048 - 32368263
Alignment:
Q  12 gaacctgtgaatcttcaaagcttttgtgaaaccatctgctagctgagcttcaatgggacaatacaccacttcaatcattcctgttgtcacttgttctctt 111  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||| |    
T  32368048 gaacctgtcaatcttcaatgcttttgtgaaaccatctgctagctgagcttca-tgggacagtacaccacttcaatcattccttttgtcatttgttctcct 32368146  T
Q  112 atgaagtgaaacctagtttcaatgtgtttactcataccatgtgctattggattcttgaccatatttatagcagatatgttgtcaatcttcagcttcagtg 211  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||    
T  32368147 atgaagtgaaacctagtttcaatgtgtttactcctgccatgtgctattggattctctgccatatttatagcagatatgttgtcaatctttagcttcagtg 32368246  T
Q  212 gtttctttacttcacag 228  Q
    |||||||||||||||||    
T  32368247 gtttctttacttcacag 32368263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 8124570 - 8124783
Alignment:
Q  12 gaacctgtgaatcttcaaagcttttgtgaaaccatctgctagctgagcttcaatgggacaatacaccacttcaatcattcctgttgtcacttgttctctt 111  Q
    |||||| | ||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||  ||||||||||||||||| |||| ||||||||| |     
T  8124570 gaacctatcaatcttcaaagcttttgtgaaaccatctgctagttgagcttcagtaggacagtattccacttcaatcattccttttgtgacttgttctttg 8124669  T
Q  112 atgaagtgaaacctagtttcaatgtgtttactcataccatgtgctattggattcttgaccatatttatagcagatatgttgtcaatcttcagcttcagtg 211  Q
    ||||||| ||| || ||||| || || || ||| | ||||||| ||||||||||||| ||| ||||||||  ||| ||||||||||||||||||||||||    
T  8124670 atgaagtaaaatctggtttctatatgcttgctcctgccatgtgttattggattcttggccaaatttatagttgatttgttgtcaatcttcagcttcagtg 8124769  T
Q  212 gtttctttacttca 225  Q
    ||||||| ||||||    
T  8124770 gtttcttcacttca 8124783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 4958083 - 4958298
Alignment:
Q  12 gaacctgtgaatcttcaaagcttttgtgaaaccatctgctagctgagcttcaatgggacaatacaccacttcaatcattcctgttgtcacttgttctctt 111  Q
    |||||| | |||||||||||||||||||||||||||||| || ||||||||| | ||||||||  ||||||||||||||||| |||| ||||||||| |     
T  4958083 gaacctattaatcttcaaagcttttgtgaaaccatctgcaagttgagcttcagtaggacaatattccacttcaatcattccttttgtgacttgttctttg 4958182  T
Q  112 atgaagtgaaacctagtttcaatgtgtttactcataccatgtgctattggattcttgaccatatttatagcagatatgttgtcaatcttcagcttcagtg 211  Q
    || |||||||| |||||||| || || || ||| | |||||||| |||||||||||| ||| |||||| |  ||| |||||| |||||||||||||||||    
T  4958183 ataaagtgaaatctagtttctatatgcttgctcctgccatgtgcaattggattcttggccaaatttattgttgatctgttgttaatcttcagcttcagtg 4958282  T
Q  212 gtttctttacttcaca 227  Q
    ||||||||||||||||    
T  4958283 gtttctttacttcaca 4958298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 12371292 - 12371085
Alignment:
Q  12 gaacctgtgaatcttcaaagcttttgtgaaaccatctgctagctgagcttcaatgggacaatacaccacttcaatcattcctgttgtcacttgttctctt 111  Q
    |||||| | |||||||||||||||||||||||||||||| || ||||||||| | ||||| ||  ||||||||||||||||| |||| |||||||||||     
T  12371292 gaacctatcaatcttcaaagcttttgtgaaaccatctgcaagatgagcttcagtaggacagtattccacttcaatcattccttttgtgacttgttctctg 12371193  T
Q  112 atgaagtgaaacctagtttcaatgtgtttactcataccatgtgctattggattcttgaccatatttatagcagatatgttgtcaatcttcagcttcagtg 211  Q
    || |||||||| |||||||  || || || ||| | |||||||| |||||||||||| ||| |||||         | ||||||||||||||||||||||    
T  12371192 ataaagtgaaatctagtttttatatgcttgctcctgccatgtgcaattggattcttggccaaattta--------ctattgtcaatcttcagcttcagtg 12371101  T
Q  212 gtttctttacttcaca 227  Q
    ||||||||||||||||    
T  12371100 gtttctttacttcaca 12371085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 18194650 - 18194435
Alignment:
Q  12 gaacctgtgaatcttcaaagcttttgtgaaaccatctgctagctgagcttcaatgggacaatacaccacttcaatcattcctgttgtcacttgttctctt 111  Q
    |||||| | |||||| || |||||||||||||||||| | || ||| ||||| | ||||||||  |||||||||||||| || |||| ||||||||||      
T  18194650 gaacctatcaatcttgaaggcttttgtgaaaccatctccaagttgaacttcagtaggacaatattccacttcaatcatttcttttgtgacttgttctcgg 18194551  T
Q  112 atgaagtgaaacctagtttcaatgtgtttactcataccatgtgctattggattcttgaccatatttatagcagatatgttgtcaatcttcagcttcagtg 211  Q
    || |||||||| |||| ||  || || || ||| | ||| |||| |||||||||||| ||| |||||| |  ||| ||||||||||||||||||||||||    
T  18194550 ataaagtgaaatctagcttttatatgcttgctcctgccacgtgcaattggattcttggccaaatttattgttgatctgttgtcaatcttcagcttcagtg 18194451  T
Q  212 gtttctttacttcaca 227  Q
    ||||||||||||||||    
T  18194450 gtttctttacttcaca 18194435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 1183360 - 1183271
Alignment:
Q  78 cacttcaatcattcctgttgtcacttgttctcttatgaagtgaaacctagtttcaatgtgtttactcataccatgtgctattggattctt 167  Q
    ||||||| |||| ||  |||||||||||||  | ||||| |  ||||||||||||| |||||||||  | ||||||||||| ||||||||    
T  1183360 cacttcattcatgccctttgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattctt 1183271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 26078804 - 26078591
Alignment:
Q  12 gaacctgtgaatcttcaaagcttttgtgaaaccatctgctagctgagcttcaatgggacaatacaccacttcaatcattcctgttgtcacttgttctctt 111  Q
    |||||| | |||||||||||||||||||||||||||||| || ||| ||||| | ||||| | |  |||||||||||||||| | || |||||||||||     
T  26078804 gaacctttaaatcttcaaagcttttgtgaaaccatctgcaagttgaacttcagtaggacagttc--cacttcaatcattcctttagtgacttgttctctg 26078707  T
Q  112 atgaagtgaaacctagtttcaatgtgtttactcataccatgtgctattggattcttgaccatatttatagcagatatgttgtcaatcttcagcttcagtg 211  Q
    |||||| |||| || ||||| || || || ||  |  ||||||| |||| ||||||| ||| |||||| |  ||| ||||| ||||||||| ||||| ||    
T  26078706 atgaagggaaatctggtttctatatgcttgcttctggcatgtgcaattgcattcttggccaaatttattgttgatctgttgccaatcttcaacttcaatg 26078607  T
Q  212 gtttctttacttcaca 227  Q
    ||||||||||||||||    
T  26078606 gtttctttacttcaca 26078591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 228
Target Start/End: Complemental strand, 5243602 - 5243469
Alignment:
Q  95 ttgtcacttgttctcttatgaagtgaaacctagtttcaatgtgtttactcataccatgtgctattggattcttgaccatatttatagcagatatgttgtc 194  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||| |||| |||| ||  | | ||||||||  ||| | |||||    
T  5243602 ttgtcacttgttcccttatgaaatgaaacctagtttcaatgtgttttctcctaccatgtgttattagattgttagctaaatttatagttgatctattgtc 5243503  T
Q  195 aatcttcagcttcagtggtttctttacttcacag 228  Q
    ||||||||| || || || |||| ||||||||||    
T  5243502 aatcttcagttttaggggcttctctacttcacag 5243469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 5247040 - 5246972
Alignment:
Q  21 aatcttcaaagcttttgtgaaaccatctgctagctgagcttcaatgggacaatacaccacttcaatcat 89  Q
    ||||||||| || || ||||| || ||||||| |||||||||| | ||||||| |||||||||||||||    
T  5247040 aatcttcaatgccttcgtgaatccgtctgctacctgagcttcagtaggacaatgcaccacttcaatcat 5246972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 35898411 - 35898326
Alignment:
Q  82 tcaatcattcctgttgtcacttgttctcttatgaagtgaaacctagtttcaatgtgtttactcataccatgtgctattggattctt 167  Q
    |||||||||||  | ||||| || ||||| ||||| || || || || ||||||||||||||| | ||||||| ||||||||||||    
T  35898411 tcaatcattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttactcctgccatgtgatattggattctt 35898326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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